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(-) Description

Title :  SOLUTION STRUCTURE OF DIMERIC SAM DOMAIN FROM MAPKKK STE11
 
Authors :  S. Bhattacharjya, P. Xu, R. Gingras, R. Shaykhutdinov, C. Wu, M. Whiteway, F. Ni
Date :  24 Aug 04  (Deposition) - 30 Aug 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (8x)
Keywords :  Sam Domain, Map Kinase, Ste11, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Bhattacharjya, P. Xu, R. Gingras, R. Shaykhutdinov, C. Wu, M. Whiteway, F. Ni
Solution Structure Of The Dimeric Sam Domain Of Mapkkk Ste11 And Its Interactions With The Adaptor Protein Ste50 From The Budding Yeast: Implications For Ste11 Activation And Signal Transmission Through The Ste50-Ste11 Complex.
J. Mol. Biol. V. 344 1071 2004
PubMed-ID: 15544813  |  Reference-DOI: 10.1016/J.JMB.2004.09.018
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE STE11
    ChainsA, B
    EC Number2.7.1.37
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET14B
    Expression System StrainBL21 DE3
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentSAM DOMAIN (RESIDUES 37-104)
    GeneSTE11
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932

 Structural Features

(-) Chains, Units

  
NMR Structure (8x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1X9X)

(-) Sites  (0, 0)

(no "Site" information available for 1X9X)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1X9X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1X9X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1X9X)

(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_DOMAINPS50105 SAM domain profile.STE11_YEAST25-84
 
  2A:10-68
B:93-151

(-) Exons   (1, 2)

NMR Structure (1, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YLR362W1YLR362W.1XII:849865-8520182154STE11_YEAST1-7177172A:7-68
B:90-151
62
62

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:62
 aligned with STE11_YEAST | P23561 from UniProtKB/Swiss-Prot  Length:717

    Alignment length:62
                                    31        41        51        61        71        81  
          STE11_YEAST    22 LPFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQR  83
               SCOP domains d1x9xa_ A: Serine/threonine-protein kinase ste11               SCOP domains
               CATH domains 1x9xA00 A:7-68 Transcription Factor, Ets-1                     CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---SAM_DOMAIN  PDB: A:10-68 UniProt: 25-84                     PROSITE
               Transcript 1 Exon 1.1  PDB: A:7-68 UniProt: 1-717 [INCOMPLETE]              Transcript 1
                 1x9x A   7 LPFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQR  68
                                    16        26        36        46        56        66  

Chain B from PDB  Type:PROTEIN  Length:62
 aligned with STE11_YEAST | P23561 from UniProtKB/Swiss-Prot  Length:717

    Alignment length:62
                                    31        41        51        61        71        81  
          STE11_YEAST    22 LPFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQR  83
               SCOP domains d1x9xb_ B: Serine/threonine-protein kinase ste11               SCOP domains
               CATH domains 1x9xB00 B:90-151 Transcription Factor, Ets-1                   CATH domains
           Pfam domains (1) SAM_2-1x9xB01 B:90-150                                       - Pfam domains (1)
           Pfam domains (2) SAM_2-1x9xB02 B:90-150                                       - Pfam domains (2)
         Sec.struct. author ..hhhhhhh...hhhhhhhhhhhh...........hhhhhhhh....hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---SAM_DOMAIN  PDB: B:93-151 UniProt: 25-84                    PROSITE
               Transcript 1 Exon 1.1  PDB: B:90-151 UniProt: 1-717 [INCOMPLETE]            Transcript 1
                 1x9x B  90 LPFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQR 151
                                    99       109       119       129       139       149  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure

(-) CATH Domains  (1, 2)

NMR Structure

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: SAM (26)

(-) Gene Ontology  (24, 24)

NMR Structure(hide GO term definitions)
Chain A,B   (STE11_YEAST | P23561)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004709    MAP kinase kinase kinase activity    Catalysis of the phosphorylation and activation of a MAP kinase kinase; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases.
    GO:0032093    SAM domain binding    Interacting selectively and non-covalently with a SAM (Sterile Alpha Motif) domain, which is a 70-amino acid protein sequence that participates in protein-protein, protein-lipid, and protein-RNA interactions and is conserved from lower to higher eukaryotes.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0000196    MAPK cascade involved in cell wall organization or biogenesis    A MAPK cascade that contributes to cell wall organization or biogenesis.
    GO:0000161    MAPK cascade involved in osmosensory signaling pathway    A MAPK cascade involved in signal transduction in response to change in osmotic conditions.
    GO:0000186    activation of MAPKK activity    The initiation of the activity of the inactive enzyme MAP kinase kinase (MAPKK).
    GO:0034605    cellular response to heat    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
    GO:0001403    invasive growth in response to glucose limitation    A growth pattern exhibited by budding haploid cells under certain growth conditions, in which cells retain the typical axial budding pattern of haploids, but become elongated and fail to separate after division; during growth on a solid substrate, this results in penetration of cells into the agar medium. An example of this process is found in Saccharomyces cerevisiae.
    GO:0007232    osmosensory signaling pathway via Sho1 osmosensor    A series of molecular signals generated in response to osmotic change, as mediated through a Sho1 osmosensor system.
    GO:0000750    pheromone-dependent signal transduction involved in conjugation with cellular fusion    A signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion. An example of this process is found in Saccharomyces cerevisiae.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0007124    pseudohyphal growth    A pattern of cell growth that occurs in conditions of nitrogen limitation and abundant fermentable carbon source. Cells become elongated, switch to a unipolar budding pattern, remain physically attached to each other, and invade the growth substrate.
    GO:0010525    regulation of transposition, RNA-mediated    Any process that modulates the frequency, rate or extent of RNA-mediated transposition. RNA-mediated transposition is a type of transpositional recombination which occurs via an RNA intermediate.
    GO:0019236    response to pheromone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus.
    GO:0001402    signal transduction involved in filamentous growth    Relaying of environmental signals promoting filamentous growth.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        STE11_YEAST | P235611ow5

(-) Related Entries Specified in the PDB File

5933 CHEMICAL SHIFTS