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(-) Description

Title :  SOLUTION STRUCTURE OF THE FIRST RRM DOMAIN OF HUMAN SPLICEOSOMAL PROTEIN SF3B49
 
Authors :  K. Kuwasako, N. Nameki, K. Tsuda, M. Takahashi, A. Sato, N. Tochio, M. In T. Terada, T. Kigawa, N. Kobayashi, M. Shirouzu, T. Ito, T. Sakamoto, K. Wakamatsu, P. Guntert, S. Takahashi, S. Yokoyama, Y. Muto, Riken S Genomics/Proteomics Initiative (Rsgi)
Date :  06 Sep 16  (Deposition) - 12 Apr 17  (Release) - 12 Apr 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Rrm, Sf3B49, Sf3B145, U2 Snrnp, Rna Binding Protein, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Kuwasako, N. Nameki, K. Tsuda, M. Takahashi, A. Sato, N. Tochio, M. Inoue, T. Terada, T. Kigawa, N. Kobayashi, M. Shirouzu, T. Ito, T. Sakamoto, K. Wakamatsu, P. Guntert, S. Takahashi, S. Yokoyama, Y. Muto
Solution Structure Of The First Rna Recognition Motif Domai Of Human Spliceosomal Protein Sf3B49 And Its Mode Of Interaction With A Sf3B145 Fragment.
Protein Sci. V. 26 280 2017
PubMed-ID: 27862552  |  Reference-DOI: 10.1002/PRO.3080

(-) Compounds

Molecule 1 - SPLICING FACTOR 3B SUBUNIT 4
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SF3B4, SAP49
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SPLICEOSOMAL PROTEIN SF3B49, PRE-MRNA-SPLICING FACTOR SF3B 49 KDA SUBUNIT,SPLICEOSOME-ASSOCIATED PROTEIN 49,SAP 49

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5GVQ)

(-) Sites  (0, 0)

(no "Site" information available for 5GVQ)

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh...........eeeee......hhhhhhhhhh....eeeee............eeeeee.hhhhhhhhhhhhh..ee..ee.eeee.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 5gvq A   1 GSSGSSGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKNLSGPSSG 105
                                    10        20        30        40        50        60        70        80        90       100
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 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 1X5U: 1,1)

(no "SCOP Domain" information available for 5GVQ, only for superseded entry 1X5U replaced by 5GVQ)

(-) CATH Domains  (0, 0 ; only for superseded entry 1X5U: 1,1)

(no "CATH Domain" information available for 5GVQ, only for superseded entry 1X5U replaced by 5GVQ)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (13, 13)

NMR Structure(hide GO term definitions)

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  SF3B4_HUMAN | Q15427
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SF3B4_HUMAN | Q15427: 1x5t

(-) Related Entries Specified in the PDB File

1x5u RELATED ID: 36018 RELATED DB: BMRB