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(-) Description

Title :  SOLUTION STRUCTURE OF THE ZF-AN1 DOMAIN FROM HUMAN HYPOTHETICAL PROTEIN FLJ13222
 
Authors :  T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  15 May 05  (Deposition) - 15 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Zf-An1 Domain, Zinc Binding, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The Zf-An1 Domain From Human Hypothetical Protein Flj13222
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN FLJ13222
    Chains: A
    Engineered: YES
    Expression System Plasmid: P041206-01
    Expression System Vector Type: PLASMID
    Fragment: ZF-AN1 DOMAIN
    Gene: TEX27
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:18 , CYS A:21 , CYS A:42 , HIS A:45BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:35 , CYS A:37 , HIS A:51 , CYS A:53BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1X4W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1X4W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1X4W)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_AN1PS51039 Zinc finger AN1-type profile.ZFAN3_HUMAN154-200  1A:15-61

(-) Exons   (3, 3)

NMR Structure (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002872181aENSE00001460453chr6:37787275-37787792518ZFAN3_HUMAN1-24240--
1.2ENST000002872182ENSE00001671630chr6:37897735-3789777541ZFAN3_HUMAN24-38150--
1.4aENST000002872184aENSE00001085877chr6:38029369-38029551183ZFAN3_HUMAN38-99620--
1.6ENST000002872186ENSE00001945392chr6:38050168-3805023366ZFAN3_HUMAN99-121231A:1-33
1.8bENST000002872188bENSE00002182860chr6:38084348-38084515168ZFAN3_HUMAN121-177571A:3-38 (gaps)57
1.11cENST0000028721811cENSE00001192289chr6:38120011-381224002390ZFAN3_HUMAN177-227511A:38-67 (gaps)44

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:67
 aligned with ZFAN3_HUMAN | Q9H8U3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:102
                                   128       138       148       158       168       178       188       198       208       218  
          ZFAN3_HUMAN   119 GTDSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQ 220
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains --------------------------------------zf-AN1-1x4wA01 A:18-61                      -------------------- Pfam domains
         Sec.struct. author .......---------------------..................hhhhhhhhh............................--------------..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------ZF_AN1  PDB: A:15-61 UniProt: 154-200          -------------------- PROSITE
           Transcript 1 (1) 1.6-------------------------------------------------------Exon 1.11c  PDB: A:38-67 (gaps) [INCOMPLETE] Transcript 1 (1)
           Transcript 1 (2) --Exon 1.8b  PDB: A:3-38 (gaps) UniProt: 121-177           ------------------------------------------- Transcript 1 (2)
                 1x4w A   1 GSSGSSG---------------------SRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGS--------------GPSSG  67
                                  |  -         -        |9        19        29        39        49        59  |      -       |65  
                                  7                     8                                                    62             63
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1X4W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1X4W)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: zf-AN1] (8)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (ZFAN3_HUMAN | Q9H8U3)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.

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