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(-) Description

Title :  CRYSTAL STRUCTURE OF A MEMBER OF YJGF FAMILY FROM SULFOLOBUS TOKODAII (ST0811)
 
Authors :  T. Miyakawa, W. C. Lee, K. Hatano, Y. Kato, Y. Sawano, K. Miyazono, K. Nag M. Tanokura
Date :  20 Apr 05  (Deposition) - 07 Feb 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  B  (3x)
Keywords :  Yjgf-Like Protein, Archaea, St0811, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Miyakawa, W. C. Lee, K. Hatano, Y. Kato, Y. Sawano, K. Miyazono, K. Nagata, M. Tanokura
Crystal Structure Of The Yjgf/Yer057C/Uk114 Family Protein From The Hyperthermophilic Archaeon Sulfolobus Tokodaii Strain 7
Proteins V. 62 557 2006
PubMed-ID: 16323205  |  Reference-DOI: 10.1002/PROT.20778

(-) Compounds

Molecule 1 - HYPOTHETICAL UPF0076 PROTEIN ST0811
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: ROSETTA(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ST0811
    Organism Scientific: SULFOLOBUS TOKODAII
    Organism Taxid: 273063
    Strain: STR. 7
    Synonym: YJGF-LIKE PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (3x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1X25)

(-) Sites  (0, 0)

(no "Site" information available for 1X25)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1X25)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1X25)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UPF0076PS01094 Uncharacterized protein family UPF0076 signature.Y811_SULTO100-118
 		  2A:100-118
B:100-118
Biological Unit 1 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UPF0076PS01094 Uncharacterized protein family UPF0076 signature.Y811_SULTO100-118
 		  3A:100-118
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UPF0076PS01094 Uncharacterized protein family UPF0076 signature.Y811_SULTO100-118
 		  1-
B:100-118
Biological Unit 3 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UPF0076PS01094 Uncharacterized protein family UPF0076 signature.Y811_SULTO100-118
 		  3-
B:100-118

(-) Exons   (0, 0)

(no "Exon" information available for 1X25)

(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:126
 aligned with Y811_SULTO | Q973T6 from UniProtKB/Swiss-Prot  Length:125

    Alignment length:126
                              1                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118      
           Y811_SULTO     - --METVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVICSK 124
               SCOP domains --d1x25a1 A:1-124 Hypothetical protein ST0811                                                                                  SCOP domains
               CATH domains 1x25A00 A:-1-124  [code=3.30.1330.40, no name defined]                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhh.....eeeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------UPF0076            ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1x25 A  -1 SHMETVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVICSK 124
                                     8        18        28        38        48        58        68        78        88        98       108       118      


Chain B from PDB  Type:PROTEIN  Length:128
 aligned with Y811_SULTO | Q973T6 from UniProtKB/Swiss-Prot  Length:125

    Alignment length:128
                               1                                                                                                                            
                               |     7        17        27        37        47        57        67        77        87        97       107       117        
           Y811_SULTO     - ---METVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVICSKG 125
               SCOP domains d1x25b_ B: Hypothetical protein ST0811                                                                                           SCOP domains
               CATH domains 1x25B00 B:-2-125  [code=3.30.1330.40, no name defined]                                                                           CATH domains
           Pfam domains (1) --------Ribonuc_L-PSP-1x25B01 B:6-124                                                                                          - Pfam domains (1)
           Pfam domains (2) --------Ribonuc_L-PSP-1x25B02 B:6-124                                                                                          - Pfam domains (2)
         Sec.struct. author ...eeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhh.....eeeeee...hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------UPF0076            ------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x25 B  -2 GSHMETVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVICSKG 125
                                     7        17        27        37        47        57        67        77        87        97       107       117
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: Ribonuc_L-PSP] (16)

(-) Gene Ontology  (0, 0)

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(-) Related Entries Specified in the PDB File

1qd9 BACILLUS SUBTILIS YABJ