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Title :   SOLUTION STRUCTURE OF THE CH DOMAIN OF HUMAN TRANSGELIN-2

Authors :   T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   15 Feb 05 (Deposition) - 15 Aug 05 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Ch Domain, F-Actin Binding, All Helix, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Nppsfa, National Project On Protein Structural And Functional Analyses, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The Ch Domain Of Human Transgelin-2
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 1)

PROSITE Motifs (3, 2)

Exons (4, 4)

NMR Structure (4, 4)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000368097	1a	ENSE00001942932	chr1:159895522-159895240	283	TAGL2_HUMAN	-	0	0	-	-
1.5	ENST00000368097	5	ENSE00002194896	chr1:159890327-159890120	208	TAGL2_HUMAN	1-60	60	1	A:1-52	52
1.6	ENST00000368097	6	ENSE00000789039	chr1:159889625-159889451	175	TAGL2_HUMAN	61-119	59	1	A:53-111	59
1.7a	ENST00000368097	7a	ENSE00000789040	chr1:159889166-159889064	103	TAGL2_HUMAN	119-153	35	1	A:111-145	35
1.7e	ENST00000368097	7e	ENSE00001446309	chr1:159888731-159887897	835	TAGL2_HUMAN	153-199	47	1	A:145-155 (gaps)	31

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:155
 aligned with TAGL2_HUMAN | P37802 from UniProtKB/Swiss-Prot  Length:199

    Alignment length:175
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178     
          TAGL2_HUMAN     9 GLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRG 183
               SCOP domains d1wyma_ A: automated matches                                                                                                                                                    SCOP domains
               CATH domains ------------1wymA01 A:13-144 Actin-binding Protein, T-fimbrin; domain 1                                                                         ------------------------------- CATH domains
               Pfam domains ------------------CH-1wymA01 A:19-128                                                                                           ----------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhh.......hhhhhhh..hhhhhhhhhhhhhhhhh.....................--------------------..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------Q------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ---------------CH  PDB: A:16-128 UniProt: 24-136                                                                                -------------------------------------CALPONIN_2 PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------CALPONIN_1 PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: A:1-52 UniProt: 1-60 [INCOMPLETE]    Exon 1.6  PDB: A:53-111 UniProt: 61-119                    ---------------------------------Exon 1.7e  PDB: A:145-155 (gaps Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------Exon 1.7a  PDB: A:111-145          ------------------------------ Transcript 1 (2)
                 1wym A   1 GSSGSSGQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKES--------------------GPSSG 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         -         -|    
                                                                                                                                                                               150                  151

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (4, 4)

NMR Structure(hide GO term definitions)

Chain A (TAGL2_HUMAN | P37802)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0030855	epithelial cell differentiation	The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0031982	vesicle	Any small, fluid-filled, spherical organelle enclosed by membrane.

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