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(-) Description

Title :  SOLUTION STRUCTURE OF SUBUNIT C OF F1FO-ATP SYNTHASE FROM THE THERMOPHILIC BACILLUS PS3
 
Authors :  T. Nakano, T. Ikegami, T. Suzuki, M. Yoshida, H. Akutsu
Date :  29 Nov 04  (Deposition) - 13 Dec 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (30x)
Keywords :  Atpase, Atp Synthase, Membrane Protein, Hydrogen Ion Transport, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Nakano, T. Ikegami, T. Suzuki, M. Yoshida, H. Akutsu
Solution Structure Tf1Fo Subunit C
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ATP SYNTHASE C CHAIN
    Chains: A
    EC Number: 3.6.3.14
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTR19-C2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ATPE
    Organism Scientific: BACILLUS SP. PS3
    Organism Taxid: 2334
    Synonym: F1FO-ATPASE SUBUNIT C, LIPID-BINDING PROTEIN

 Structural Features

(-) Chains, Units

  
NMR Structure (30x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1WU0)

(-) Sites  (0, 0)

(no "Site" information available for 1WU0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WU0)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WU0)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ATPASE_CPS00605 ATP synthase c subunit signature.ATPL_BACP335-56  1A:35-56

(-) Exons   (0, 0)

(no "Exon" information available for 1WU0)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:72
 aligned with ATPL_BACP3 | P00845 from UniProtKB/Swiss-Prot  Length:72

    Alignment length:72
                                    10        20        30        40        50        60        70  
            ATPL_BACP3    1 MSLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLGR 72
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains 1wu0A00 A:1-72 F1FO ATP Synthase                                         CATH domains
               Pfam domains --ATP-synt_C-1wu0A01 A:3-72                                              Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------ATPASE_C  PDB: A:35-56---------------- PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1wu0 A  1 MSLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLGR 72
                                    10        20        30        40        50        60        70
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1WU0)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: ATP-synt_C] (9)

(-) Gene Ontology  (13, 13)

NMR Structure(hide GO term definitions)
Chain A   (ATPL_BACP3 | P00845)
molecular function
    GO:0015078    hydrogen ion transmembrane transporter activity    Enables the transfer of hydrogen ions from one side of a membrane to the other.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045263    proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins.
    GO:0033177    proton-transporting two-sector ATPase complex, proton-transporting domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins.

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(-) Related Entries Specified in the PDB File

1a91 F1FO ATPASE SUBUNIT C
1aty F1FO ATP SYNTHASE (E.C.3.6.1.34) SUBUNIT C (RESIDUES 9 - 26, 52 - 79) MUTANT WITH ALA 67 REPLACED BY CYS (A67C) (NMR, 9 STRUCTURES)
1c0v PROTEIN (F1FO ATPASE SUBUNIT C)
1c17 ATP SYNTHASE SUBUNIT C
1c99 PROTEOLIPID F1FO ATPASE SUBUNIT C
1qo1 ATP SYNTHASE ALPHA CHAIN, ATP SYNTHASE BETA CHAIN, ATP SYNTHASE GAMMA CHAIN, ATP SYNTHASE DELTA CHAIN, ATP SYNTHASE PROTEIN 9