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(-) Description

Title :  CRYSTAL STRUCTURE OF RSBQ
 
Authors :  T. Kaneko, T. Kumasaka, N. Tanaka
Date :  21 Aug 04  (Deposition) - 01 Feb 05  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Alpha/Beta Hydrolase, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Kaneko, N. Tanaka, T. Kumasaka
Crystal Structures Of Rsbq, A Stress-Response Regulator In Bacillus Subtilis
Protein Sci. V. 14 558 2005
PubMed-ID: 15632289  |  Reference-DOI: 10.1110/PS.041170005

(-) Compounds

Molecule 1 - SIGMA FACTOR SIGB REGULATION PROTEIN RSBQ
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTYB12
    Expression System Strain: ER2566
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 5-269
    Gene: RSBQ
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: RSBQ

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric Unit (2, 13)
No.NameCountTypeFull Name
1MLA1Ligand/IonMALONIC ACID
2PGO12Ligand/IonS-1,2-PROPANEDIOL
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
1MLA1Ligand/IonMALONIC ACID
2PGO9Ligand/IonS-1,2-PROPANEDIOL
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MLA-1Ligand/IonMALONIC ACID
2PGO3Ligand/IonS-1,2-PROPANEDIOL

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:63 , LEU A:65 , GLN A:69 , HIS A:115 , GLN A:190 , HIS A:268 , HOH A:689BINDING SITE FOR RESIDUE MLA A 501
02AC2SOFTWAREPHE A:27 , SER A:96 , VAL A:97 , VAL A:163BINDING SITE FOR RESIDUE PGO A 601
03AC3SOFTWAREPHE B:27 , HIS B:95 , SER B:96BINDING SITE FOR RESIDUE PGO B 602
04AC4SOFTWAREHIS A:1 , SER A:4 , ARG A:8BINDING SITE FOR RESIDUE PGO A 603
05AC5SOFTWARESER A:32 , VAL A:33 , ILE A:172 , GLU A:175 , ARG A:179 , MET A:251BINDING SITE FOR RESIDUE PGO A 604
06AC6SOFTWAREALA A:161 , THR A:162 , GLY B:135 , GLN B:140BINDING SITE FOR RESIDUE PGO B 605
07AC7SOFTWAREASP B:86BINDING SITE FOR RESIDUE PGO B 606
08AC8SOFTWAREARG A:201 , GLU A:202 , TYR A:229BINDING SITE FOR RESIDUE PGO A 607
09AC9SOFTWARESER A:16 , GLY A:17 , GLU A:43 , ASP A:44BINDING SITE FOR RESIDUE PGO A 608
10BC1SOFTWAREGLY A:28 , CYS A:29 , TYR A:52 , VAL A:53 , GLY A:54 , SER A:55 , THR A:183 , PHE A:191BINDING SITE FOR RESIDUE PGO A 609
11BC2SOFTWAREGLU A:89 , PRO A:110 , GLU A:111 , PHE A:113 , HOH A:643BINDING SITE FOR RESIDUE PGO A 610
12BC3SOFTWAREALA A:19 , LEU A:265 , HIS A:268 , VAL A:269 , HOH A:684BINDING SITE FOR RESIDUE PGO A 611
13BC4SOFTWAREGLU A:146 , LYS A:150 , GLU B:146 , LYS B:150BINDING SITE FOR RESIDUE PGO A 612

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WOM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:129 -Pro A:130
2Pro B:129 -Pro B:130

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WOM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WOM)

(-) Exons   (0, 0)

(no "Exon" information available for 1WOM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:271
 aligned with RSBQ_BACSU | O07015 from UniProtKB/Swiss-Prot  Length:269

    Alignment length:271
                              1                                                                                                                                                                                                                                                                            
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268 
           RSBQ_BACSU     - --MNEAILSRNHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYSSLKQMEARGHCPHMSHPDETIQLIGDYLKAHV 269
               SCOP domains d1woma_ A: automated matches                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..eeee....eeeee.....hhhhhh.hhhhhh...eeee................hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.......ee...ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh...eeeeeee.....hhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wom A  -1 AGHMTSILSRNHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYSSLKQMEARGHCPHMSHPDETIQLIGDYLKAHV 269
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268 


Chain B from PDB  Type:PROTEIN  Length:270
 aligned with RSBQ_BACSU | O07015 from UniProtKB/Swiss-Prot  Length:269

    Alignment length:270
                             1                                                                                                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269
           RSBQ_BACSU     - -MNEAILSRNHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYSSLKQMEARGHCPHMSHPDETIQLIGDYLKAHV 269
               SCOP domains d1womb_ B: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ---------------------Abhydrolase_6-1womB01 B:21-260                                                                                                                                                                                                                  --------- Pfam domains (1)
           Pfam domains (2) ---------------------Abhydrolase_6-1womB02 B:21-260                                                                                                                                                                                                                  --------- Pfam domains (2)
         Sec.struct. author .hhhhhhhhh..eeee...eeeeee.....hhhhhh.hhhhhh..eeeee........hhhhhh..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.......ee...ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhh...eeeeeee.....hhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wom B   0 GHMTSILSRNHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYSSLKQMEARGHCPHMSHPDETIQLIGDYLKAHV 269
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WOM)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: AB_hydrolase (347)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (RSBQ_BACSU | O07015)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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 Related Entries

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        RSBQ_BACSU | O07015: 1wpr

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