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(-) Description

Title :  CRYSTAL STRUCTURE OF ST0689, AN ARCHAEAL HEPN HOMOLOGUE
 
Authors :  T. Arakawa, J. Akutsu, M. Yohda
Date :  20 Aug 04  (Deposition) - 22 Nov 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.62
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha Helix, Loop, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Arakawa, J. Akutsu, M. Yohda
Crystal Structure Analysis Of St0689, An Archaeal Hepn Protein
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 122AA LONG CONSERVED HYPOTHETICAL PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23A
    Expression System Strain: B834, BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: SULFOLOBUS TOKODAII
    Organism Taxid: 273063
    Strain: STR. 7
    Synonym: ST0689

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1TBU2Ligand/IonTERTIARY-BUTYL ALCOHOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:33 , HOH A:138 , HOH A:147 , HOH A:181BINDING SITE FOR RESIDUE TBU A 123

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:31 -A:106
2A:72 -A:109

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr A:81 -Pro A:82
2Tyr A:85 -Pro A:86

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1WOL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:122
 aligned with Q974G3_SULTO | Q974G3 from UniProtKB/TrEMBL  Length:122

    Alignment length:122
                                    10        20        30        40        50        60        70        80        90       100       110       120  
         Q974G3_SULTO     1 MKRVEDWIKQAERDLEEARYAKSGGYYELACFLSQQCAEKAVKGLLQFQGIEKRGHSISHLLTNPPADILQCATFLDKQYTPSRYPDVYYEGAPYEYYTERDADECINCAIRILNWVKGQIK 122
               SCOP domains d1wola_ A: automated matches                                                                                               SCOP domains
               CATH domains 1wolA00 A:1-122 Nucleotidyltransferases  domain 2                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh...hhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wol A   1 MKRVEDWIKQAERDLEEARYAKSGGYYELACFLSQQCAEKAVKGLLQFQGIEKRGHSISHLLTNPPADILQCATFLDKQYTPSRYPDVYYEGAPYEYYTERDADECINCAIRILNWVKGQIK 122
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1WOL)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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