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(-) Description

Title :  CRYSTAL STRUCTURE OF ARCHAEAL RELE-RELB COMPLEX FROM PYROCOCCUS HORIKOSHII OT3
 
Authors :  H. Takagi, Y. Kakuta, R. Kamachi, M. Yao, I. Tanaka, M. Kimura
Date :  09 Jul 04  (Deposition) - 15 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A (2x),B (2x),C (2x),D (2x)
Biol. Unit 3:  A (1x),B (1x),C (1x),D (1x)
Biol. Unit 4:  A (1x),B (1x),C (1x),D (1x)
Biol. Unit 5:  A,B  (1x)
Biol. Unit 6:  C,D  (1x)
Keywords :  Toxin-Antitoxin Complex, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Takagi, Y. Kakuta, T. Okada, M. Yao, I. Tanaka, M. Kimura
Crystal Structure Of Archaeal Toxin-Antitoxin Rele-Relb Complex With Implications For Toxin Activity And Antitoxin Effects
Nat. Struct. Mol. Biol. V. 12 327 2005
PubMed-ID: 15768033  |  Reference-DOI: 10.1038/NSMB911

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PHS013
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-22B
    Expression System Strain: BL21-CODON PLUS (DE3)-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 70601
    Strain: OT3
    Synonym: RELE
 
Molecule 2 - HYPOTHETICAL PROTEIN PHS014
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-22B
    Expression System Strain: BL21-CODON PLUS (DE3)-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 70601
    Strain: OT3
    Synonym: RELB

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (2x): A (2x)B (2x)C (2x)D (2x)
Biological Unit 3 (1x): A (1x)B (1x)C (1x)D (1x)
Biological Unit 4 (1x): A (1x)B (1x)C (1x)D (1x)
Biological Unit 5 (1x): AB  
Biological Unit 6 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1WMI)

(-) Sites  (0, 0)

(no "Site" information available for 1WMI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WMI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WMI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WMI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WMI)

(-) Exons   (0, 0)

(no "Exon" information available for 1WMI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:88
 aligned with O73966_PYRHO | O73966 from UniProtKB/TrEMBL  Length:90

    Alignment length:88
                                    10        20        30        40        50        60        70        80        
          O73966_PYRHO    1 MTYRVKIHKQVVKALQSLPKAHYRRFLEFRDILEYEPVPREKFDVIKLEGTGDLDLYRARLGDYRVIYSVNWKDKVIKILKLKPRGRA 88
               SCOP domains d1wmia1 A:1-88 Hypothetical protein PHS013                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeehhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhh.eeee....eeeeeee....eeeeeee....eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  1wmi A  1 MTYRVKIHKQVVKALQSLPKAHYRRFLEFRDILEYEPVPREKFDVIKLEGTGDLDLYRARLGDYRVIYSVNWKDKVIKILKLKPRGRA 88
                                    10        20        30        40        50        60        70        80        


Chain B from PDB  Type:PROTEIN  Length:61
 aligned with O73967_PYRHO | O73967 from UniProtKB/TrEMBL  Length:67

    Alignment length:61
                                    16        26        36        46        56        66 
          O73967_PYRHO    7 GDVLKELERLKVEIQRLEAMLMPEERDEDITEEEIAELLELARDEDPENWIDAEELPEPED 67
               SCOP domains d1wmib1 B:7-67 Hypothetical protein PHS014                    SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhh..hhh.eee.hhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                  1wmi B  7 GDVLKELERLKVEIQRLEAMLMPEERDEDITEEEIAELLELARDEDPENWIDAEELPEPED 67
                                    16        26        36        46        56        66 


Chain C from PDB  Type:PROTEIN  Length:88
 aligned with O73966_PYRHO | O73966 from UniProtKB/TrEMBL  Length:90

    Alignment length:88
                                    10        20        30        40        50        60        70        80        
          O73966_PYRHO    1 MTYRVKIHKQVVKALQSLPKAHYRRFLEFRDILEYEPVPREKFDVIKLEGTGDLDLYRARLGDYRVIYSVNWKDKVIKILKLKPRGRA 88
               SCOP domains d1wmic_ C: automated matches                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --Plasmid_stabil-1wmiC01 C:3-88                                                          Pfam domains (1)
           Pfam domains (2) --Plasmid_stabil-1wmiC02 C:3-88                                                          Pfam domains (2)
         Sec.struct. author ...eeeeehhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhh.eeee....eeeeeee....eeeeeee....eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  1wmi C  1 MTYRVKIHKQVVKALQSLPKAHYRRFLEFRDILEYEPVPREKFDVIKLEGTGDLDLYRARLGDYRVIYSVNWKDKVIKILKLKPRGRA 88
                                    10        20        30        40        50        60        70        80        


Chain D from PDB  Type:PROTEIN  Length:61
 aligned with O73967_PYRHO | O73967 from UniProtKB/TrEMBL  Length:67

    Alignment length:61
                                    16        26        36        46        56        66 
          O73967_PYRHO    7 GDVLKELERLKVEIQRLEAMLMPEERDEDITEEEIAELLELARDEDPENWIDAEELPEPED 67
               SCOP domains d1wmid_ D: automated matches                                  SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhh.eee.hhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                  1wmi D  7 GDVLKELERLKVEIQRLEAMLMPEERDEDITEEEIAELLELARDEDPENWIDAEELPEPED 67
                                    16        26        36        46        56        66
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WMI)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: Plasmid_toxin (9)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1WMI)

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