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(-) Description

Title :  CRYSTAL STRUCTURE OF L-ASPARAGINASE I HOMOLOGUE PROTEIN FROM PYROCOCCUS HORIKOSHII
 
Authors :  M. Yao, H. Morita, Y. Yasutake, I. Tanaka
Date :  29 Jun 04  (Deposition) - 15 Mar 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Yao, Y. Yasutake, H. Morita, I. Tanaka
Structure Of The Type I L-Asparaginase From The Hyperthermophilic Archaeon Pyrococcus Horikoshii At 2. 16 Angstroms Resolution.
Acta Crystallogr. , Sect. D V. 61 294 2005
PubMed-ID: 15735339  |  Reference-DOI: 10.1107/S0907444904032950
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - L-ASPARAGINASE
    Chains: A, B
    EC Number: 3.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-26B
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PH0066
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 53953

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric/Biological Unit (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1WLS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WLS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WLS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WLS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WLS)

(-) Exons   (0, 0)

(no "Exon" information available for 1WLS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
 aligned with O57797_PYRHO | O57797 from UniProtKB/TrEMBL  Length:328

    Alignment length:328
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320        
         O57797_PYRHO     1 MRILILGMGGTIASVKGERGYESALSVSKILKLAGISSEAKIEARDLMNVDSTLIQPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFMLRNPPIPIVLTGSMLPITEKNSDAPFNLRTALEFVKLGIRGIYIAFNGKVMLGVRASKIRSMGFDAFESINYPNVAEIKDDKLRILHIPDFYGDEFFSDIKYEPKVLVIKLIPGLSGDIVREALRLGYKGIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTTQAIYDGVDLQRYKVGRIALEAGVIPAGDMTKEATITKLMWILGHTKNIEEVKQLMGKNITGELTRVS 328
               SCOP domains d1wlsa_ A: automated matches                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....ee......ee..hhhhhhhh..........eeeeeeehhhhhhhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhee....eeeee...........hhhhhhhhhhhhhh....eeeeee..eeee...eee........eee......eeee..eeee...........ee.......eeeee......hhhhhhhhhh...eeeeee...........hhhhhhhhhh....eeeee...........hhhhhhhhhh..ee....hhhhhhhhhhhhh....hhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wls A   1 mRILILGmGGTIASVKGERGYESALSVSKILKLAGISSEAKIEARDLmNVDSTLIQPSDWERLAKEIEKEVWEYDGIVITHGTDTmAYSASmLSFmLRNPPIPIVLTGSmLPITEKNSDAPFNLRTALEFVKLGIRGIYIAFNGKVmLGVRASKIRSmGFDAFESINYPNVAEIKDDKLRILHIPDFYGDEFFSDIKYEPKVLVIKLIPGLSGDIVREALRLGYKGIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTTQAIYDGVDLQRYKVGRIALEAGVIPAGDmTKEATITKLmWILGHTKNIEEVKQLmGKNITGELTRVS 328
                            |      |10        20        30        40       |50        60        70        80     |  90 |   | 100       110       120       130       140      |150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310     | 320        
                            |      8-MSE                                  48-MSE                                86-MSE |   |           110-MSE                              147-MSE    158-MSE                                                                                                                             290-MSE   300-MSE         316-MSE        
                            1-MSE                                                                                     92-MSE                                                                                                                                                                                                                                        
                                                                                                                          96-MSE                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:328
 aligned with O57797_PYRHO | O57797 from UniProtKB/TrEMBL  Length:328

    Alignment length:328
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320        
         O57797_PYRHO     1 MRILILGMGGTIASVKGERGYESALSVSKILKLAGISSEAKIEARDLMNVDSTLIQPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFMLRNPPIPIVLTGSMLPITEKNSDAPFNLRTALEFVKLGIRGIYIAFNGKVMLGVRASKIRSMGFDAFESINYPNVAEIKDDKLRILHIPDFYGDEFFSDIKYEPKVLVIKLIPGLSGDIVREALRLGYKGIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTTQAIYDGVDLQRYKVGRIALEAGVIPAGDMTKEATITKLMWILGHTKNIEEVKQLMGKNITGELTRVS 328
               SCOP domains d1wlsb_ B: automated matches                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eeee..eeee..hhhhhhhhhh......eeeeeeeee.....hhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhee....eeeee...........hhhhhhhhhhhhhh....eeeeee..eeee...eee........eee......eeee..eeee...........ee.......eeeee......hhhhhhhhhh...eeeeee...........hhhhhhhhhh....eeeee...........hhhhhhhhhh..ee....hhhhhhhhhhhhhh...hhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wls B   1 mRILILGmGGTIASVKGERGYESALSVSKILKLAGISSEAKIEARDLmNVDSTLIQPSDWERLAKEIEKEVWEYDGIVITHGTDTmAYSASmLSFmLRNPPIPIVLTGSmLPITEKNSDAPFNLRTALEFVKLGIRGIYIAFNGKVmLGVRASKIRSmGFDAFESINYPNVAEIKDDKLRILHIPDFYGDEFFSDIKYEPKVLVIKLIPGLSGDIVREALRLGYKGIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTTQAIYDGVDLQRYKVGRIALEAGVIPAGDmTKEATITKLmWILGHTKNIEEVKQLmGKNITGELTRVS 328
                            |      |10        20        30        40       |50        60        70        80     |  90 |   | 100       110       120       130       140      |150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310     | 320        
                            1-MSE  8-MSE                                  48-MSE                                86-MSE |   |           110-MSE                              147-MSE    158-MSE                                                                                                                             290-MSE   300-MSE         316-MSE        
                                                                                                                      92-MSE                                                                                                                                                                                                                                        
                                                                                                                          96-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WLS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1WLS)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (O57797_PYRHO | O57797)
molecular function
    GO:0004067    asparaginase activity    Catalysis of the reaction: L-asparagine + H2O = L-aspartate + NH3.
biological process
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O57797_PYRHO | O57797: 1wnf

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