1WKP - JenaLib

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Asymmetric Unit (Jmol Viewer)

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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   FLOWERING LOCUS T (FT) FROM ARABIDOPSIS THALIANA

Authors :   D. Miller, M. J. Banfield, V. J. Winter, R. L. Brady

Date :   01 Jun 04 (Deposition) - 28 Jun 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: B,C  (1x)
Biol. Unit 6: A,D  (1x)

Keywords :   Cis-Peptide, Pebp, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. H. Ahn, D. Miller, V. J. Winter, M. J. Banfield, J. H. Lee, S. Y. Yoo, S. R. Henz, R. L. Brady, D. Weigel
A Divergent External Loop Confers Antagonistic Activity On Floral Regulators Ft And Tfl1.
Embo J. V. 25 605 2006
PubMed-ID: 16424903 | Reference-DOI: 10.1038/SJ.EMBOJ.7600950

Molecule 1 - FLOWERING LOCUS T PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-28A
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	FT
	Mutation	:	YES
	Organism Common	:	THALE CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:		B	C
Biological Unit 6 (1x)	:	A			D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 5 (1, 1)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 6 (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:27 , LEU A:28 , LYS A:29 , THR D:27 , LEU D:28 , LYS D:29 , HOH D:170 , HOH D:175	BINDING SITE FOR RESIDUE SO4 A 1001
2	AC2	SOFTWARE	THR B:27 , LEU B:28 , LYS B:29 , THR C:27 , LEU C:28 , LYS C:29 , HOH C:174 , HOH C:175	BINDING SITE FOR RESIDUE SO4 B 1002
3	AC3	SOFTWARE	ALA A:115 , GLY A:116 , ARG A:166 , THR B:114 , ALA B:115 , ARG B:166	BINDING SITE FOR RESIDUE SO4 A 1003

(no "SS Bond" information available for 1WKP)

Asymmetric Unit

No.	Residues
1	Val A:74	-	Pro A:75
2	Arg A:83	-	Glu A:84
3	Val B:74	-	Pro B:75
4	Arg B:83	-	Glu B:84
5	Val C:74	-	Pro C:75
6	Arg C:83	-	Glu C:84
7	Val D:74	-	Pro D:75
8	Arg D:83	-	Glu D:84

(no "SAP(SNP)/Variant" information available for 1WKP)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PBP	PS01220	Phosphatidylethanolamine-binding protein family signature.	FT_ARATH	65-87	4	A:65-87 B:65-87 C:65-87 D:65-87

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PBP	PS01220	Phosphatidylethanolamine-binding protein family signature.	FT_ARATH	65-87	1	A:65-87 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PBP	PS01220	Phosphatidylethanolamine-binding protein family signature.	FT_ARATH	65-87	1	- B:65-87 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PBP	PS01220	Phosphatidylethanolamine-binding protein family signature.	FT_ARATH	65-87	1	- - C:65-87 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PBP	PS01220	Phosphatidylethanolamine-binding protein family signature.	FT_ARATH	65-87	1	- - - D:65-87

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PBP	PS01220	Phosphatidylethanolamine-binding protein family signature.	FT_ARATH	65-87	2	- B:65-87 C:65-87 -

Biological Unit 6 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PBP	PS01220	Phosphatidylethanolamine-binding protein family signature.	FT_ARATH	65-87	2	A:65-87 - - D:65-87

(no "Exon" information available for 1WKP)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:163
 aligned with FT_ARATH | Q9SXZ2 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:163
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165   
             FT_ARATH     6 RDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRES 168
               SCOP domains d1wkpa_ A: automated matches                                                                                                                                        SCOP domains
               CATH domains 1wkpA00 A:6-168 Phosphatidylethanolamine-binding Protein;                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.........eeeee..ee....ee.hhhhh....eeee.......eeeeeeee.............eeeeeeeeee...hhhhheeee...........eeeeeeeee................hhhhhhhhh......eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------PBP  PDB: A:65-87      --------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wkp A   6 RDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRES 168
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165

Chain B from PDB  Type:PROTEIN  Length:162
 aligned with FT_ARATH | Q9SXZ2 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:162
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165  
             FT_ARATH     6 RDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRE 167
               SCOP domains d1wkpb_ B: automated matches                                                                                                                                       SCOP domains
               CATH domains 1wkpB00 B:6-167 Phosphatidylethanolamine-binding Protein;                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.........eeeee..ee....ee.hhhhh....eeee.......eeeeeeee.............eeeeeeeeee...hhhhheeee...........eeeeeeeee................hhhhhhhhh......eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------PBP  PDB: B:65-87      -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wkp B   6 RDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRE 167
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165

Chain C from PDB  Type:PROTEIN  Length:162
 aligned with FT_ARATH | Q9SXZ2 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:162
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165  
             FT_ARATH     6 RDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRE 167
               SCOP domains d1wkpc_ C: automated matches                                                                                                                                       SCOP domains
               CATH domains 1wkpC00 C:6-167 Phosphatidylethanolamine-binding Protein;                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.........eeeee..ee....eee.........eeee.......eeeeeeee.............eeeeeeeeee...hhhhheeee...........eeeeeeeee................hhhhhhhhh......eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------PBP  PDB: C:65-87      -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wkp C   6 RDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRE 167
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165

Chain D from PDB  Type:PROTEIN  Length:162
 aligned with FT_ARATH | Q9SXZ2 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:162
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165  
             FT_ARATH     6 RDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRE 167
               SCOP domains d1wkpd_ D: automated matches                                                                                                                                       SCOP domains
               CATH domains 1wkpD00 D:6-167 Phosphatidylethanolamine-binding Protein;                                                                                                          CATH domains
           Pfam domains (1) -------------------PBP-1wkpD01 D:25-163                                                                                                                       ---- Pfam domains (1)
           Pfam domains (2) -------------------PBP-1wkpD02 D:25-163                                                                                                                       ---- Pfam domains (2)
           Pfam domains (3) -------------------PBP-1wkpD03 D:25-163                                                                                                                       ---- Pfam domains (3)
           Pfam domains (4) -------------------PBP-1wkpD04 D:25-163                                                                                                                       ---- Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhh.........eeeee..ee....eeehhhhh....eeee.......eeeeeeee.............eeeeeeeeee...hhhhheeee...........eeeeeeeee................hhhhhhhhh......eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------PBP  PDB: D:65-87      -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wkp D   6 RDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRE 167
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: PEBP-like (18)

Superfamily: PEBP-like (18)

Family: automated matches (3)

Protein domain: automated matches (3)

Thale cress (Arabidopsis thaliana) [TaxId: 3702] (1)

1a	d1wkpa_	A:
1b	d1wkpb_	B:
1c	d1wkpc_	C:
1d	d1wkpd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Phosphatidylethanolamine-binding Protein (16)

Homologous Superfamily: Phosphatidylethanolamine-binding Protein; (16)

Thale cress (Arabidopsis thaliana) (2)

1a	1wkpA00	A:6-168
1b	1wkpB00	B:6-167
1c	1wkpC00	C:6-167
1d	1wkpD00	D:6-167

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: PBP] (9)

Family: PBP (9)

Arabidopsis thaliana (Mouse-ear cress) (2)

1a	PBP-1wkpD01	D:25-163
1b	PBP-1wkpD02	D:25-163
1c	PBP-1wkpD03	D:25-163
1d	PBP-1wkpD04	D:25-163

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (FT_ARATH | Q9SXZ2)

molecular function
	GO:0008429	phosphatidylethanolamine binding	Interacting selectively and non-covalently with phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0030154	cell differentiation	The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
	GO:0009908	flower development	The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.
	GO:0007275	multicellular organism development	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
	GO:0048573	photoperiodism, flowering	A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
	GO:0009911	positive regulation of flower development	Any process that activates or increases the frequency, rate or extent of flower development.
	GO:0009909	regulation of flower development	Any process that modulates the frequency, rate or extent of flower development.
	GO:0010119	regulation of stomatal movement	Any process that modulates the frequency, rate or extent of stomatal movement.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Asymmetric Unit
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	Cis Peptide Bonds
		Arg A:83 - Glu A:84	[ RasMol ]
		Arg B:83 - Glu B:84	[ RasMol ]
		Arg C:83 - Glu C:84	[ RasMol ]
		Arg D:83 - Glu D:84	[ RasMol ]
		Val A:74 - Pro A:75	[ RasMol ]
		Val B:74 - Pro B:75	[ RasMol ]
		Val C:74 - Pro C:75	[ RasMol ]
		Val D:74 - Pro D:75	[ RasMol ]

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	1wkp
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(no "Entries Sharing at Least One Protein Chain" available for 1WKP)

1a44	BOVINE PHOSPATIDYLETHANOLAMINE-BINDING PROTEIN (BPEBP)
1bd9	HUMAN PHOSPATIDYLETHANOLAMINE-BINDING PROTEIN (HPEBP)
1beh	HUMAN PEBP IN COMPLEX WITH CACODYLATE
1fjj	E. COLI YBHB PROTEIN
1fux	E. COLI YBCL PROTEIN
1kn3	MURINE PEBP-2 (PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN-2)
1qou	ANTIRRHINUM CENTRORADIALIS (CEN) PROTEIN
1wko	TERMINAL FLOWER 1 PROTEIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 3)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (1, 4)

Gene Ontology (11, 11)

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Related Entries Specified in the PDB File