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(-) Description

Title :  CRYSTAL STRUCTURE OF TTK003001606
 
Authors :  T. Kaminishi, H. Sakai, T. Terada, M. Shirouzu, S. Yokoyama, Riken Str Genomics/Proteomics Initiative (Rsgi)
Date :  30 May 04  (Deposition) - 30 Nov 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Ttk003001606, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Kaminishi, H. Sakai, T. Terada, M. Shirouzu, S. Yokoyama
Crystal Structure Of Ttk003001606
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TTK003001606
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1MES3Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2MSE1Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2MSE1Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2MSE1Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:94 , GLN A:101 , ARG A:102 , GLY A:106 , GLY A:136 , HOH A:202BINDING SITE FOR RESIDUE MES A 201
2AC2SOFTWAREVAL B:96 , GLN B:101 , ARG B:102 , GLY B:106 , PHE B:139 , HOH B:235 , HOH B:239BINDING SITE FOR RESIDUE MES B 202
3AC3SOFTWAREHOH A:218 , ILE C:94 , VAL C:96 , GLN C:101 , ARG C:102 , LEU C:105 , GLY C:106 , GLY C:136BINDING SITE FOR RESIDUE MES C 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WK4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WK4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WK4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WK4)

(-) Exons   (0, 0)

(no "Exon" information available for 1WK4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
 aligned with Q5SJ05_THET8 | Q5SJ05 from UniProtKB/TrEMBL  Length:175

    Alignment length:174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    
         Q5SJ05_THET8     2 VRIRRAGLEDLPGVARVLVDTWRATYRGVVPEAFLEGLSYEGQAERWAQRLKTPTWPGRLFVAESESGEVVGFAAFGPDRASGFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRMLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVAYGFDLGGHKW 175
               SCOP domains d1wk4a_ A: Probable acetyltransferase TTHA1209                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhhhhhh...hhhhhhh.hhhhhhhhhhhhhh......eeeeee.....eeeeeeeee..........eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeee..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wk4 A   1 VRIRRAGLEDLPGVARVLVDTWRATYRGVVPEAFLEGLSYEGQAERWAQRLKTPTWPGRLFVAESESGEVVGFAAFGPDRASGFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRmLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVAYGFDLGGHKW 174
                                    10        20        30        40        50        60        70        80        90       100       110       120    |  130       140       150       160       170    
                                                                                                                                                      125-MSE                                             


Chain B from PDB  Type:PROTEIN  Length:174
 aligned with Q5SJ05_THET8 | Q5SJ05 from UniProtKB/TrEMBL  Length:175

    Alignment length:174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    
         Q5SJ05_THET8     2 VRIRRAGLEDLPGVARVLVDTWRATYRGVVPEAFLEGLSYEGQAERWAQRLKTPTWPGRLFVAESESGEVVGFAAFGPDRASGFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRMLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVAYGFDLGGHKW 175
               SCOP domains d1wk4b_ B: Probable acetyltransferase TTHA1209                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhhhhhh...hhhhhhh.hhhhhhhhhhhhhhh.....eeeeee.....eeeeeeeee..........eeeeeeee.hhhh..hhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhh...eeeeeeeeee..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wk4 B   1 VRIRRAGLEDLPGVARVLVDTWRATYRGVVPEAFLEGLSYEGQAERWAQRLKTPTWPGRLFVAESESGEVVGFAAFGPDRASGFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRmLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVAYGFDLGGHKW 174
                                    10        20        30        40        50        60        70        80        90       100       110       120    |  130       140       150       160       170    
                                                                                                                                                      125-MSE                                             


Chain C from PDB  Type:PROTEIN  Length:174
 aligned with Q5SJ05_THET8 | Q5SJ05 from UniProtKB/TrEMBL  Length:175

    Alignment length:174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    
         Q5SJ05_THET8     2 VRIRRAGLEDLPGVARVLVDTWRATYRGVVPEAFLEGLSYEGQAERWAQRLKTPTWPGRLFVAESESGEVVGFAAFGPDRASGFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRMLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVAYGFDLGGHKW 175
               SCOP domains d1wk4c_ C: Probable acetyltransferase TTHA1209                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ---------------------------------------------------------------Acetyltransf_1-1wk4C01 C:64-145                                                   ----------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------Acetyltransf_1-1wk4C02 C:64-145                                                   ----------------------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------Acetyltransf_1-1wk4C03 C:64-145                                                   ----------------------------- Pfam domains (3)
         Sec.struct. author .eeee.hhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhh...........eeeeee.....eeeeeeeee..........eeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhh..eeeeeeeee....eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wk4 C   1 VRIRRAGLEDLPGVARVLVDTWRATYRGVVPEAFLEGLSYEGQAERWAQRLKTPTWPGRLFVAESESGEVVGFAAFGPDRASGFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRmLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVAYGFDLGGHKW 174
                                    10        20        30        40        50        60        70        80        90       100       110       120    |  130       140       150       160       170    
                                                                                                                                                      125-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WK4)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: Acetyltrans (109)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q5SJ05_THET8 | Q5SJ05)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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  1wk4
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UniProtKB/TrEMBL
        Q5SJ05_THET8 | Q5SJ05: 2cy2

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