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(-) Description

Authors :  S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, F. Hayashi, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  28 May 04  (Deposition) - 28 Nov 04  (Release) - 24 Feb 09  (Revision)
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Ubiquitin, 'Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, F. Hayashi, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of Mouse Hypothetical Ubiquitin-Like Protein Bab25500
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

    Expression System PlasmidP030414-61
    Expression System Vector TypePLASMID
    GeneRIKEN CDNA 2010008E23
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090

 Structural Features

(-) Chains, Units

NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
1UBIQUITIN_2PS50053 Ubiquitin domain profile.TMUB2_MOUSE173-246  1A:163-236

(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:95
 aligned with TMUB2_MOUSE | Q3V209 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:116
                                   159       169       179       189       199       209       219       229       239       249       259      
               SCOP domains d1w          ia      a_ A: Ubiquitin-like protein bab25500 (2010008E23Rik)                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------UBIQUITIN_2  PDB: A:163-236 UniProt: 173-246                              ------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                              |      -   ||    - |     169       179       189       199       209       219       229       239       249     |
                              |        159|    161                                                                                     249   250
                            158         160                                                                                                     

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

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(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (TMUB2_MOUSE | Q3V209)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.


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