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(-) Description

Title :  COAGULATION FACTOR, NMR, 15 STRUCTURES
 
Authors :  M. Sunnerhagen, G. A. Olah, J. Stenflo, S. Forsen, T. Drakenberg, J. Tre
Date :  18 Jun 96  (Deposition) - 15 May 97  (Release) - 20 Jun 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (15x)
NMR Structure *:  A  (1x)
Keywords :  Glycoprotein, Hydrolase, Serine Protease, Plasma, Blood Coagulation Factor (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Sunnerhagen, G. A. Olah, J. Stenflo, S. Forsen, T. Drakenberg, J. Trewhella
The Relative Orientation Of Gla And Egf Domains In Coagulation Factor X Is Altered By Ca2+ Binding To The Firs Egf Domain. A Combined Nmr-Small Angle X-Ray Scattering Study.
Biochemistry V. 35 11547 1996
PubMed-ID: 8794734  |  Reference-DOI: 10.1021/BI960633J
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COAGULATION FACTOR X
    ChainsA
    EC Number3.4.21.6
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    Other DetailsTHE 1 CA FORM OF THE FRAGMENT CONTAINING THE GLA AND N-TERMINAL EGF-LIKE MODULE

 Structural Features

(-) Chains, Units

  1
NMR Structure (15x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

NMR Structure (2, 13)
No.NameCountTypeFull Name
1BHD1Mod. Amino Acid(3S)-3-HYDROXY-L-ASPARTIC ACID
2CGU12Mod. Amino AcidGAMMA-CARBOXY-GLUTAMIC ACID
NMR Structure * (2, 13)
No.NameCountTypeFull Name
1BHD1Mod. Amino Acid(3S)-3-HYDROXY-L-ASPARTIC ACID
2CGU12Mod. Amino AcidGAMMA-CARBOXY-GLUTAMIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 1WHF)

(-) SS Bonds  (4, 4)

NMR Structure
No.Residues
1A:17 -A:22
2A:50 -A:61
3A:55 -A:70
4A:72 -A:81

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WHF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WHF)

(-) PROSITE Motifs  (6, 5)

NMR Structure (6, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLA_1PS00011 Vitamin K-dependent carboxylation domain.FA10_BOVIN56-81  1A:16-41
2EGF_3PS50026 EGF-like domain profile.FA10_BOVIN86-122  1A:46-82
3EGF_CAPS01187 Calcium-binding EGF-like domain signature.FA10_BOVIN86-110  1A:46-70
4ASX_HYDROXYLPS00010 Aspartic acid and asparagine hydroxylation site.FA10_BOVIN101-112  1A:61-72
5EGF_1PS00022 EGF-like domain signature 1.FA10_BOVIN110-121  1A:70-81
6EGF_2PS01186 EGF-like domain signature 2.FA10_BOVIN110-121
149-164
  1A:70-81
-
NMR Structure * (6, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLA_1PS00011 Vitamin K-dependent carboxylation domain.FA10_BOVIN56-81  1A:16-41
2EGF_3PS50026 EGF-like domain profile.FA10_BOVIN86-122  1A:46-82
3EGF_CAPS01187 Calcium-binding EGF-like domain signature.FA10_BOVIN86-110  1A:46-70
4ASX_HYDROXYLPS00010 Aspartic acid and asparagine hydroxylation site.FA10_BOVIN101-112  1A:61-72
5EGF_1PS00022 EGF-like domain signature 1.FA10_BOVIN110-121  1A:70-81
6EGF_2PS01186 EGF-like domain signature 2.FA10_BOVIN110-121
149-164
  1A:70-81
-

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000217891ENSBTAE00000377900chr12:84664833-8466490270FA10_BOVIN1-24240--
1.2ENSBTAT000000217892ENSBTAE00000278163chr12:84666990-84667150161FA10_BOVIN24-77541A:1-3737
1.3ENSBTAT000000217893ENSBTAE00000177940chr12:84671119-8467114325FA10_BOVIN78-8691A:38-469
1.4ENSBTAT000000217894ENSBTAE00000177941chr12:84672093-84672206114FA10_BOVIN86-124391A:46-8439
1.5ENSBTAT000000217895ENSBTAE00000425962chr12:84673472-84673603132FA10_BOVIN124-168451A:84-863
1.6ENSBTAT000000217896ENSBTAE00000408790chr12:84675374-84675615242FA10_BOVIN168-248810--
1.7ENSBTAT000000217897ENSBTAE00000412504chr12:84676748-84676865118FA10_BOVIN249-288400--
1.8ENSBTAT000000217898ENSBTAE00000414972chr12:84677559-84678217659FA10_BOVIN288-4922050--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:86
 aligned with FA10_BOVIN | P00743 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:86
                                    50        60        70        80        90       100       110       120      
           FA10_BOVIN    41 ANSFLEEVKQGNLERECLEEACSLEEAREVFEDAEQTDEFWSKYKDGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFSTR 126
               SCOP domains d1whfa2 A:1-46 Coagulation factor X           d1whfa1 A:47-86                          SCOP domains
               CATH domains 1whfA01 A:1-46 Coagulation Factor IX          1whfA02 A:47-86 Laminin                  CATH domains
               Pfam domains ----Gla-1whfA02 A:5-46                        ---EGF-1whfA01 A:50-80            ------ Pfam domains
         Sec.struct. author ............hhhhhh.hhhhhhhhhhh...hhhhhhhh.................eeeee....eeeee...ee.....ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------GLA_1  PDB: A:16-41       ----EGF_3  PDB: A:46-82 UniProt: 86-122  ---- PROSITE (1)
                PROSITE (2) ---------------------------------------------EGF_CA  PDB: A:46-70     ---------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------ASX_HYDROXYL-------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------EGF_1       ----- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------EGF_2       ----- PROSITE (5)
           Transcript 1 (1) Exon 1.2  PDB: A:1-37 UniProt: 24-77 Exon 1.3 -------------------------------------1.5 Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------Exon 1.4  PDB: A:46-84 UniProt: 86-124 -- Transcript 1 (2)
                 1whf A   1 ANSFLeeVKQGNLeReCLeeACSLeeAReVFeDAeQTDeFWSKYKDGDQCEGHPCLNQGHCKdGIGDYTCTCAEGFEGKNCEFSTR  86
                                 || 10   | |  20    ||  30 |  |   40        50        60  |     70        80      
                                 6-CGU  14-CGU||    ||  |  |  |   |                      63-BHD                   
                                  7-CGU   16-CGU    ||  |  |  |   |                                               
                                             19-CGU ||  |  |  |   |                                               
                                              20-CGU||  |  |  |   |                                               
                                                   25-CGU  |  |   |                                               
                                                    26-CGU |  |   |                                               
                                                       29-CGU |   |                                               
                                                          32-CGU  |                                               
                                                             35-CGU                                               

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

NMR Structure

(-) CATH Domains  (2, 2)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 2)

NMR Structure
(-)
Clan: EGF (60)

(-) Gene Ontology  (11, 11)

NMR Structure(hide GO term definitions)
Chain A   (FA10_BOVIN | P00743)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005543    phospholipid binding    Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0051897    positive regulation of protein kinase B signaling    Any process that activates or increases the frequency, rate or extent of protein kinase B signaling, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FA10_BOVIN | P007431apo 1ccf 1iod 1kig 1whe

(-) Related Entries Specified in the PDB File

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