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(-) Description

Title :  STRUCTURAL BASIS OF MUTUAL ACTIVATION OF THE TRYPTOPHAN SYNTHASE A2B2 COMPLEX FROM A HYPERTHERMOPHILE, PYROCOCCUS FURIOSUS
 
Authors :  S. J. Lee, K. Ogasahara, J. Ma, K. Nishio, M. Ishida, Y. Yamagata, T. Tsuk K. Yutani, Riken Structural Genomics/Proteomics Initiative (R
Date :  19 May 04  (Deposition) - 12 Jul 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Keywords :  Alpha/Beta, Alpha+Beta, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Lee, K. Ogasahara, J. Ma, K. Nishio, M. Ishida, Y. Yamagata, T. Tsukihara, K. Yutani
Conformational Changes In The Tryptophan Synthase From A Hyperthermophile Upon Alpha(2)Beta(2) Complex Formation: Crystal Structure Of The Complex
Biochemistry V. 44 11417 2005
PubMed-ID: 16114878  |  Reference-DOI: 10.1021/BI050317H

(-) Compounds

Molecule 1 - TRYPTOPHAN SYNTHASE ALPHA CHAIN
    Chains: A, C, E, G, I, K
    EC Number: 4.2.1.20
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTV119NDE
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TRPA
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261
    Synonym: TRYPTOPHAN SYNTHASE ALPHA SUBUNIT
 
Molecule 2 - TRYPTOPHAN SYNTHASE BETA CHAIN 1
    Chains: B, D, F, H, J, L
    EC Number: 4.2.1.20
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTV119NDE
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TRPB
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261
    Synonym: TRYPTOPHAN SYNTHASE BETA SUBUNIT

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCD        
Biological Unit 2 (1x):     EFGH    
Biological Unit 3 (1x):         IJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1PLP6Ligand/IonPYRIDOXAL-5'-PHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS B:81 , LYS B:82 , GLN B:109 , SER B:185 , GLY B:227 , GLY B:228 , GLY B:229 , SER B:230 , ASN B:231 , GLY B:298 , GLU B:345 , SER B:371 , GLY B:372 , HOH B:412BINDING SITE FOR RESIDUE PLP B 400
2AC2SOFTWAREHIS D:81 , LYS D:82 , GLN D:109 , SER D:185 , GLY D:227 , GLY D:228 , GLY D:229 , SER D:230 , ASN D:231 , GLY D:298 , GLU D:345 , SER D:371 , GLY D:372 , HOH D:423BINDING SITE FOR RESIDUE PLP D 400
3AC3SOFTWAREHIS F:81 , LYS F:82 , GLN F:109 , SER F:185 , GLY F:227 , GLY F:228 , GLY F:229 , SER F:230 , ASN F:231 , GLY F:298 , GLU F:345 , SER F:371 , GLY F:372 , HOH F:433BINDING SITE FOR RESIDUE PLP F 400
4AC4SOFTWAREHIS H:81 , LYS H:82 , GLN H:109 , SER H:185 , GLY H:227 , GLY H:228 , GLY H:229 , SER H:230 , ASN H:231 , GLY H:298 , GLU H:345 , SER H:371 , GLY H:372 , HOH H:429BINDING SITE FOR RESIDUE PLP H 400
5AC5SOFTWAREHIS J:81 , LYS J:82 , GLN J:109 , SER J:185 , GLY J:227 , GLY J:228 , GLY J:229 , SER J:230 , ASN J:231 , GLY J:298 , GLU J:345 , SER J:371 , GLY J:372BINDING SITE FOR RESIDUE PLP J 400
6AC6SOFTWAREHIS L:81 , LYS L:82 , GLN L:109 , SER L:185 , GLY L:227 , GLY L:228 , GLY L:229 , SER L:230 , ASN L:231 , GLY L:298 , GLU L:345 , SER L:371 , GLY L:372 , HOH L:429BINDING SITE FOR RESIDUE PLP L 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WDW)

(-) Cis Peptide Bonds  (18, 18)

Asymmetric Unit
No.Residues
1Asp A:15 -Pro A:16
2Arg B:49 -Pro B:50
3His B:190 -Pro B:191
4Asp C:15 -Pro C:16
5Arg D:49 -Pro D:50
6His D:190 -Pro D:191
7Asp E:15 -Pro E:16
8Arg F:49 -Pro F:50
9His F:190 -Pro F:191
10Asp G:15 -Pro G:16
11Arg H:49 -Pro H:50
12His H:190 -Pro H:191
13Asp I:15 -Pro I:16
14Arg J:49 -Pro J:50
15His J:190 -Pro J:191
16Asp K:15 -Pro K:16
17Arg L:49 -Pro L:50
18His L:190 -Pro L:191

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WDW)

(-) PROSITE Motifs  (2, 12)

Asymmetric Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TRP_SYNTHASE_ALPHAPS00167 Tryptophan synthase alpha chain signature.TRPA_PYRFU35-48
 
 
 
 
 		  6A:35-48
C:35-48
E:35-48
G:35-48
I:35-48
K:35-48
2TRP_SYNTHASE_BETAPS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site.TRPB1_PYRFU75-89
 
 
 
 
 		  6B:75-89
D:75-89
F:75-89
H:75-89
J:75-89
L:75-89
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TRP_SYNTHASE_ALPHAPS00167 Tryptophan synthase alpha chain signature.TRPA_PYRFU35-48
 
 
 
 
 		  2A:35-48
C:35-48
-
-
-
-
2TRP_SYNTHASE_BETAPS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site.TRPB1_PYRFU75-89
 
 
 
 
 		  2B:75-89
D:75-89
-
-
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TRP_SYNTHASE_ALPHAPS00167 Tryptophan synthase alpha chain signature.TRPA_PYRFU35-48
 
 
 
 
 		  2-
-
E:35-48
G:35-48
-
-
2TRP_SYNTHASE_BETAPS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site.TRPB1_PYRFU75-89
 
 
 
 
 		  2-
-
F:75-89
H:75-89
-
-
Biological Unit 3 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TRP_SYNTHASE_ALPHAPS00167 Tryptophan synthase alpha chain signature.TRPA_PYRFU35-48
 
 
 
 
 		  2-
-
-
-
I:35-48
K:35-48
2TRP_SYNTHASE_BETAPS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site.TRPB1_PYRFU75-89
 
 
 
 
 		  2-
-
-
-
J:75-89
L:75-89

(-) Exons   (0, 0)

(no "Exon" information available for 1WDW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:241
 aligned with TRPA_PYRFU | Q8U094 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
           TRPA_PYRFU     1 MFKDGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLG 247
               SCOP domains d1wdwa_ A: Trp synthase alpha-subunit                                                                                                                                                                                                                   SCOP domains
               CATH domains 1wdwA00 A:1-247 Aldolase class I                                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....hhhhhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhh..hhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh..ee..ee....hhhhhhhhhhhh...eeee...------...hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeeehhhhhhhhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------TRP_SYNTHASE_A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdw A   1 MFKDGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLY------EEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLG 247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     |   -  |    180       190       200       210       220       230       240       
                                                                                                                                                                                               166    173                                                                          


Chain B from PDB  Type:PROTEIN  Length:385
 aligned with TRPB1_PYRFU | Q8U093 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     
          TRPB1_PYRFU     1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
               SCOP domains d1wdwb_ B: Tryptophan synthase, beta-subunit                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --1wdwB01 B:3-47,B:82-200                      1wdwB02 B:48-81,B:201-385         1wdwB01 B:3-47,B:82-200  [code=3.40.50.1100, no name defined]                                                          1wdwB02 B:48-81,B:201-385  [code=3.40.50.1100, no name defined]                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeehhhhhhhhh..eeeeee.hhh....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh.....eeeeeeeee.hhhhh.........eeeee..eeeee..............hhhhh....hhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------TRP_SYNTHASE_BE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdw B   1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     


Chain C from PDB  Type:PROTEIN  Length:241
 aligned with TRPA_PYRFU | Q8U094 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
           TRPA_PYRFU     1 MFKDGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI 248
               SCOP domains d1wdwc_ C: Trp synthase alpha-subunit                                                                                                                                                                                                                    SCOP domains
               CATH domains 1wdwC00 C:1-248 Aldolase class I                                                                                                                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....hhhhhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhh..hhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh..ee..ee....hhhhhhhhhhhh...eeee...-------..hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeeehhhhhhhhhhhh..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------TRP_SYNTHASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdw C   1 MFKDGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLY-------EIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     |   -   |   180       190       200       210       220       230       240        
                                                                                                                                                                                               166     174                                                                          


Chain D from PDB  Type:PROTEIN  Length:385
 aligned with TRPB1_PYRFU | Q8U093 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     
          TRPB1_PYRFU     1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
               SCOP domains d1wdwd_ D: Tryptophan synthase, beta-subunit                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --1wdwD01 D:3-47,D:82-200                      1wdwD02 D:48-81,D:201-385         1wdwD01 D:3-47,D:82-200  [code=3.40.50.1100, no name defined]                                                          1wdwD02 D:48-81,D:201-385  [code=3.40.50.1100, no name defined]                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeehhhhhhhhh..eeeeee.hhh....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh.....eeeeeeeee.hhhhh.........eeeee..eeeee..............hhhhh....hhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------TRP_SYNTHASE_BE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdw D   1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     


Chain E from PDB  Type:PROTEIN  Length:248
 aligned with TRPA_PYRFU | Q8U094 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
           TRPA_PYRFU     1 MFKDGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI 248
               SCOP domains d1wdwe_ E: Trp synthase alpha-subunit                                                                                                                                                                                                                    SCOP domains
               CATH domains 1wdwE00 E:1-248 Aldolase class I                                                                                                                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....hhhhhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhh..hhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh..ee..ee....hhhhhhhhhhhh...eeee............hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeeehhhhhhhhhhhh..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------TRP_SYNTHASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdw E   1 MFKDGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        


Chain F from PDB  Type:PROTEIN  Length:385
 aligned with TRPB1_PYRFU | Q8U093 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     
          TRPB1_PYRFU     1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
               SCOP domains d1wdwf_ F: Tryptophan synthase, beta-subunit                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --1wdwF01 F:3-47,F:82-200                      1wdwF02 F:48-81,F:201-385         1wdwF01 F:3-47,F:82-200  [code=3.40.50.1100, no name defined]                                                          1wdwF02 F:48-81,F:201-385  [code=3.40.50.1100, no name defined]                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeehhhhhhhhh..eeeeee.hhh....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh.....eeeeeeeee.hhhhh.........eeeee..eeeee..............hhhhh....hhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------TRP_SYNTHASE_BE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdw F   1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     


Chain G from PDB  Type:PROTEIN  Length:242
 aligned with TRPA_PYRFU | Q8U094 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
           TRPA_PYRFU     1 MFKDGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI 248
               SCOP domains d1wdwg_ G: Trp synthase alpha-subunit                                                                                                                                                                                                                    SCOP domains
               CATH domains 1wdwG00 G:1-248 Aldolase class I                                                                                                                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....hhhhhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhh..hhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh..ee..ee....hhhhhhhhhhhh...eeee...------...hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeeehhhhhhhhhhhh..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------TRP_SYNTHASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdw G   1 MFKDGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLY------EEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     |   -  |    180       190       200       210       220       230       240        
                                                                                                                                                                                               166    173                                                                           


Chain H from PDB  Type:PROTEIN  Length:385
 aligned with TRPB1_PYRFU | Q8U093 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     
          TRPB1_PYRFU     1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
               SCOP domains d1wdwh_ H: Tryptophan synthase, beta-subunit                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --1wdwH01 H:3-47,H:82-200                      1wdwH02 H:48-81,H:201-385         1wdwH01 H:3-47,H:82-200  [code=3.40.50.1100, no name defined]                                                          1wdwH02 H:48-81,H:201-385  [code=3.40.50.1100, no name defined]                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeehhhhhhhhh..eeeeee.hhh....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh.....eeeeeeeee.hhhhh.........eeeee..eeeee..............hhhhh....hhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------TRP_SYNTHASE_BE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdw H   1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     


Chain I from PDB  Type:PROTEIN  Length:244
 aligned with TRPA_PYRFU | Q8U094 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
           TRPA_PYRFU     1 MFKDGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI 248
               SCOP domains d1wdwi_ I: Trp synthase alpha-subunit                                                                                                                                                                                                                    SCOP domains
               CATH domains 1wdwI00 I:1-248 Aldolase class I                                                                                                                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....hhhhhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhh..hhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh..ee..ee....hhhhhhhhhhhh...eeee....----....hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeeehhhhhhhhhhhh..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------TRP_SYNTHASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdw I   1 MFKDGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYG----REEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      |  - |     180       190       200       210       220       230       240        
                                                                                                                                                                                                167  172                                                                            


Chain J from PDB  Type:PROTEIN  Length:385
 aligned with TRPB1_PYRFU | Q8U093 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     
          TRPB1_PYRFU     1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
               SCOP domains d1wdwj_ J: Tryptophan synthase, beta-subunit                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --1wdwJ01 J:3-47,J:82-200                      1wdwJ02 J:48-81,J:201-385         1wdwJ01 J:3-47,J:82-200  [code=3.40.50.1100, no name defined]                                                          1wdwJ02 J:48-81,J:201-385  [code=3.40.50.1100, no name defined]                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeehhhhhhhhh..eeeeee.hhh....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh.....eeeeeeeee.hhhhh.........eeeee..eeeee..............hhhhh....hhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------TRP_SYNTHASE_BE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdw J   1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     


Chain K from PDB  Type:PROTEIN  Length:234
 aligned with TRPA_PYRFU | Q8U094 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
           TRPA_PYRFU     1 MFKDGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI 248
               SCOP domains d1wdwk_ K: Trp synthase alpha-subunit                                                                                                                                                                                                                    SCOP domains
               CATH domains 1wdwK00 K:1-248 Aldolase class I                                                                                                                                                                                                                         CATH domains
           Pfam domains (1) -Trp_syntA-1wdwK01 K:2-246                                                                                                                                                                                                                            -- Pfam domains (1)
           Pfam domains (2) -Trp_syntA-1wdwK02 K:2-246                                                                                                                                                                                                                            -- Pfam domains (2)
           Pfam domains (3) -Trp_syntA-1wdwK03 K:2-246                                                                                                                                                                                                                            -- Pfam domains (3)
           Pfam domains (4) -Trp_syntA-1wdwK04 K:2-246                                                                                                                                                                                                                            -- Pfam domains (4)
           Pfam domains (5) -Trp_syntA-1wdwK05 K:2-246                                                                                                                                                                                                                            -- Pfam domains (5)
           Pfam domains (6) -Trp_syntA-1wdwK06 K:2-246                                                                                                                                                                                                                            -- Pfam domains (6)
         Sec.struct. author .....eeeeeee....hhhhhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhh..hhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh..ee..ee....hhhhhhhhhhhh...eeee.--------------hhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeeehhhhhhhhhhhh..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------TRP_SYNTHASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdw K   1 MFKDGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVS--------------AYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160   |     -       180       190       200       210       220       230       240        
                                                                                                                                                                                             164            179                                                                     


Chain L from PDB  Type:PROTEIN  Length:385
 aligned with TRPB1_PYRFU | Q8U093 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     
          TRPB1_PYRFU     1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
               SCOP domains d1wdwl_ L: Tryptophan synthase, beta-subunit                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --1wdwL01 L:3-47,L:82-200                      1wdwL02 L:48-81,L:201-385         1wdwL01 L:3-47,L:82-200  [code=3.40.50.1100, no name defined]                                                          1wdwL02 L:48-81,L:201-385  [code=3.40.50.1100, no name defined]                                                                                                                           CATH domains
           Pfam domains (1) --------------------------------------------PALP-1wdwL01 L:45-372                                                                                                                                                                                                                                                                                                                   ------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------PALP-1wdwL02 L:45-372                                                                                                                                                                                                                                                                                                                   ------------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------PALP-1wdwL03 L:45-372                                                                                                                                                                                                                                                                                                                   ------------- Pfam domains (3)
           Pfam domains (4) --------------------------------------------PALP-1wdwL04 L:45-372                                                                                                                                                                                                                                                                                                                   ------------- Pfam domains (4)
           Pfam domains (5) --------------------------------------------PALP-1wdwL05 L:45-372                                                                                                                                                                                                                                                                                                                   ------------- Pfam domains (5)
           Pfam domains (6) --------------------------------------------PALP-1wdwL06 L:45-372                                                                                                                                                                                                                                                                                                                   ------------- Pfam domains (6)
         Sec.struct. author .ee..ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeehhhhhhhhh..eeeeee.hhh....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh.....eeeeeeeee.hhhhh.........eeeee..eeeee..............hhhhh....hhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------TRP_SYNTHASE_BE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdw L   1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 18)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: [code=3.40.50.1100, no name defined] (77)
(-)
Pyrococcus furiosus. Organism_taxid: 2261. (2)
1a1wdwB01B:3-47,B:82-200
1b1wdwB02B:48-81,B:201-385
1c1wdwD02D:48-81,D:201-385
1d1wdwF02F:48-81,F:201-385
1e1wdwH02H:48-81,H:201-385
1f1wdwJ02J:48-81,J:201-385
1g1wdwL02L:48-81,L:201-385
1h1wdwD01D:3-47,D:82-200
1i1wdwF01F:3-47,F:82-200
1j1wdwH01H:3-47,H:82-200
1k1wdwJ01J:3-47,J:82-200
1l1wdwL01L:3-47,L:82-200
(-)
Architecture: Alpha-Beta Barrel (2994)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: TIM_barrel (694)
(-)
Clan: no clan defined [family: PALP] (67)

(-) Gene Ontology  (8, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G,I,K   (TRPA_PYRFU | Q8U094)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0004834    tryptophan synthase activity    Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O.
biological process
    GO:0009073    aromatic amino acid family biosynthetic process    The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0000162    tryptophan biosynthetic process    The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate.
    GO:0006568    tryptophan metabolic process    The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.

Chain B,D,F,H,J,L   (TRPB1_PYRFU | Q8U093)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0004834    tryptophan synthase activity    Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O.
biological process
    GO:0009073    aromatic amino acid family biosynthetic process    The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0000162    tryptophan biosynthetic process    The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate.
    GO:0006568    tryptophan metabolic process    The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.

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  TRPA_PYRFU | Q8U094
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  TRPB1_PYRFU | Q8U093
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  TRPA_PYRFU | Q8U094
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        TRPA_PYRFU | Q8U094: 1geq 2dzp 2dzs 2dzt 2dzu 2dzv 2dzw 2dzx 2e09 5e0k
        TRPB1_PYRFU | Q8U093: 1v8z 5dvz 5dw0 5dw3 5e0k 5ixj 5t6m 5vm5

(-) Related Entries Specified in the PDB File

1geq CRYSTAL STRUCTURE OF THE TRYPTOPHAN SYNTHASE A-SUBUNIT FROM A HYPERTHERMOPHILE, PYROCOCCUS FURIOSUS
1v8z CRYSTAL STRUCTURE OF THE TRYPTOPHAN SYNTHASE B2-SUBUNIT FROM A HYPERTHERMOPHILE, PYROCOCCUS FURIOSUS RELATED ID: MY_001000046.1 RELATED DB: TARGETDB