1W86 - JenaLib

Title :   SOLUTION STRUCTURE OF AN DSDNA:LNA TRIPLEX

Authors :   J. J. Sorensen, J. T. Nielsen, M. Petersen

Date :   16 Sep 04 (Deposition) - 25 Nov 04 (Release) - 24 Nov 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B,C  (20x)

Keywords :   Dna Complex, Lna, Dna, Triplex, Nmr Spectroscopy, Structure (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. J. Sorensen, J. T. Nielsen, M. Petersen
Solution Structure Of A Dsdna:Lna Triplex
Nucleic Acids Res. V. 32 6078 2004
PubMed-ID: 15550567 | Reference-DOI: 10.1093/NAR/GKH942

Compounds

Molecule 1 - INTRAMOLECULAR DSDNA-LNA TRIPLEX
	Chains	:	A
	Other Details	:	HEXAKIS (ETHYLENE GLYCOL) LINKERS BETWEEN A8 AND T9
	Synthetic	:	YES

Molecule 2 - INTRAMOLECULAR DSDNA-LNA TRIPLEX
	Chains	:	B
	Other Details	:	HEXAKIS (ETHYLENE GLYCOL) LINKERS BETWEEN T16 AND T17
	Synthetic	:	YES

Molecule 3 - INTRAMOLECULAR DSDNA-LNA TRIPLEX
	Chains	:	C
	Other Details	:	C18, C20 AND C22 (LNA NUCLEOTIDES) ARE PROTONATED AT N3
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 3)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:DNA  Length:8
                                       
                  1w86 A  1 AGAGAGAA  8

Chain B from PDB  Type:DNA  Length:8
                                       
                  1w86 B  9 TTCTCTCT 16

Chain C from PDB  Type:DNA/RNA  Length:8
                                       
                  1w86 C 17 TcTcTcTT 24
                             | | |  
                            18-LCC  
                              20-LCC
                                22-LCC

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Classification and Annotation

SCOP Domains (0, 0)

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Gene Ontology (0, 0)

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