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(-) Description

Title :  STRUCTURE OF THE OXIDISED FORM OF HUMAN THIOREDOXIN 2
 
Authors :  A. Smeets, C. Evrard, J. P. Declercq
Date :  30 Jul 04  (Deposition) - 05 Oct 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Thioredoxin, Antioxidant Enzyme, Mitochondrion, Electron Transport, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Smeets, C. Evrard, M. Landtmeters, C. Marchand, B. Knoops, J. P. Declercq
Crystal Structures Of Oxidized And Reduced Forms Of Human Mitochondrial Thioredoxin 2.
Protein Sci. V. 14 2610 2005
PubMed-ID: 16195549  |  Reference-DOI: 10.1110/PS.051632905
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - THIOREDOXIN, MITOCHONDRIAL
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQE30
    Expression System StrainM15 (PREP4)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentRESIDUE 60-166
    OrganLIVER
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMT-TRX, THIOREDOXIN 2

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)AB    
Biological Unit 2 (1x)  CD  
Biological Unit 3 (1x)    EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1W4V)

(-) Sites  (0, 0)

(no "Site" information available for 1W4V)

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:31 -A:34
2B:31 -B:34
3C:31 -C:34
4D:31 -D:34
5E:31 -E:34
6F:31 -F:34

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Val A:74 -Pro A:75
2Val B:74 -Pro B:75
3Val C:74 -Pro C:75
4Val D:74 -Pro D:75
5Val E:74 -Pro E:75
6Val F:74 -Pro F:75

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1W4V)

(-) PROSITE Motifs  (2, 9)

Asymmetric Unit (2, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.THIOM_HUMAN50-166
 
 
  3A:1-107
B:1-107
E:1-107
2THIOREDOXIN_1PS00194 Thioredoxin family active site.THIOM_HUMAN82-100
 
 
 
 
 
  6A:23-41
B:23-41
C:23-41
D:23-41
E:23-41
F:23-41
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.THIOM_HUMAN50-166
 
 
  2A:1-107
B:1-107
-
2THIOREDOXIN_1PS00194 Thioredoxin family active site.THIOM_HUMAN82-100
 
 
 
 
 
  2A:23-41
B:23-41
-
-
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.THIOM_HUMAN50-166
 
 
  0-
-
-
2THIOREDOXIN_1PS00194 Thioredoxin family active site.THIOM_HUMAN82-100
 
 
 
 
 
  2-
-
C:23-41
D:23-41
-
-
Biological Unit 3 (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.THIOM_HUMAN50-166
 
 
  1-
-
E:1-107
2THIOREDOXIN_1PS00194 Thioredoxin family active site.THIOM_HUMAN82-100
 
 
 
 
 
  2-
-
-
-
E:23-41
F:23-41

(-) Exons   (3, 18)

Asymmetric Unit (3, 18)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002161851aENSE00001942639chr22:36878077-36877611467THIOM_HUMAN-00--
1.3aENST000002161853aENSE00001666349chr22:36876884-36876622263THIOM_HUMAN1-88886A:-2-29 (gaps)
B:-2-29 (gaps)
C:1-29
D:-1-29
E:-2-29 (gaps)
F:0-29
68
68
29
31
68
30
1.4ENST000002161854ENSE00001770514chr22:36872903-36872780124THIOM_HUMAN88-129426A:29-70
B:29-70
C:29-70
D:29-70
E:29-70
F:29-70
42
42
42
42
42
42
1.6fENST000002161856fENSE00001672028chr22:36863964-36863083882THIOM_HUMAN130-166376A:71-107
B:71-107
C:71-107
D:71-107
E:71-107
F:71-107
37
37
37
37
37
37

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:110
 aligned with THIOM_HUMAN | Q99757 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:146
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160      
          THIOM_HUMAN    21 QGQWPPLTSRALQTPQCSPGGLTVTPNPARTIYTTRISLTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 166
               SCOP domains d1      w                              4va_ A: automated matches                                                                                   SCOP domains
               CATH domains 1w      4                              vA00 A:-2-107 Glutaredoxin                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..------.------------------------------.eee..hhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhh......eeeeee..eeeeeee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------THIOREDOXIN_2  PDB: A:1-107 UniProt: 50-166                                                                           PROSITE (1)
                PROSITE (2) -------------------------------------------------------------THIOREDOXIN_1      ------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.3a  PDB: A:-2-29 (gaps) UniProt: 1-88 [INCOMPLETE]           -----------------------------------------Exon 1.6f  PDB: A:71-107              Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------Exon 1.4  PDB: A:29-70 UniProt: 88-129    ------------------------------------- Transcript 1 (2)
                 1w4v A  -2 HG------S------------------------------TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 107
                             |      |-         -         -         1        11        21        31        41        51        61        71        81        91       101      
                             |      0                              1                                                                                                          
                            -1                                                                                                                                                

Chain B from PDB  Type:PROTEIN  Length:110
 aligned with THIOM_HUMAN | Q99757 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:146
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160      
          THIOM_HUMAN    21 QGQWPPLTSRALQTPQCSPGGLTVTPNPARTIYTTRISLTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 166
               SCOP domains d1      w                              4vb_ B: automated matches                                                                                   SCOP domains
               CATH domains 1w      4                              vB00 B:-2-107 Glutaredoxin                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..------.------------------------------.eee..hhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhh......eeeeee..eeeeeee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------THIOREDOXIN_2  PDB: B:1-107 UniProt: 50-166                                                                           PROSITE (1)
                PROSITE (2) -------------------------------------------------------------THIOREDOXIN_1      ------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.3a  PDB: B:-2-29 (gaps) UniProt: 1-88 [INCOMPLETE]           -----------------------------------------Exon 1.6f  PDB: B:71-107              Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------Exon 1.4  PDB: B:29-70 UniProt: 88-129    ------------------------------------- Transcript 1 (2)
                 1w4v B  -2 HG------S------------------------------TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 107
                             |      |-         -         -         1        11        21        31        41        51        61        71        81        91       101      
                            -1      0                              1                                                                                                          

Chain C from PDB  Type:PROTEIN  Length:107
 aligned with THIOM_HUMAN | Q99757 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:107
                                    69        79        89        99       109       119       129       139       149       159       
          THIOM_HUMAN    60 TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 166
               SCOP domains d1w4vc_ C: automated matches                                                                                SCOP domains
               CATH domains 1w4vC00 C:1-107 Glutaredoxin                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhh......eeeeee..eeeeeee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: - UniProt: 50-166                                                                       PROSITE (1)
                PROSITE (2) ----------------------THIOREDOXIN_1      ------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.3a  PDB: C:1-29       -----------------------------------------Exon 1.6f  PDB: C:71-107              Transcript 1 (1)
           Transcript 1 (2) ----------------------------Exon 1.4  PDB: C:29-70 UniProt: 88-129    ------------------------------------- Transcript 1 (2)
                 1w4v C   1 TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 107
                                    10        20        30        40        50        60        70        80        90       100       

Chain D from PDB  Type:PROTEIN  Length:109
 aligned with THIOM_HUMAN | Q99757 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:109
                                    67        77        87        97       107       117       127       137       147       157         
          THIOM_HUMAN    58 SLTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 166
               SCOP domains d1w4vd_ D: automated matches                                                                                  SCOP domains
               CATH domains 1w4vD00 D:-1-107 Glutaredoxin                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..hhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhh.....eeeeee..eeeeeee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: - UniProt: 50-166                                                                         PROSITE (1)
                PROSITE (2) ------------------------THIOREDOXIN_1      ------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.3a  PDB: D:-1-29        -----------------------------------------Exon 1.6f  PDB: D:71-107              Transcript 1 (1)
           Transcript 1 (2) ------------------------------Exon 1.4  PDB: D:29-70 UniProt: 88-129    ------------------------------------- Transcript 1 (2)
                 1w4v D  -1 GSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 107
                                     8        18        28        38        48        58        68        78        88        98         

Chain E from PDB  Type:PROTEIN  Length:110
 aligned with THIOM_HUMAN | Q99757 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:146
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160      
          THIOM_HUMAN    21 QGQWPPLTSRALQTPQCSPGGLTVTPNPARTIYTTRISLTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 166
               SCOP domains d1      w                              4ve_ E: automated matches                                                                                   SCOP domains
               CATH domains 1w      4                              vE00 E:-2-107 Glutaredoxin                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..------.------------------------------.eee..hhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhh......eeeeee..eeeeeee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------THIOREDOXIN_2  PDB: E:1-107 UniProt: 50-166                                                                           PROSITE (1)
                PROSITE (2) -------------------------------------------------------------THIOREDOXIN_1      ------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.3a  PDB: E:-2-29 (gaps) UniProt: 1-88 [INCOMPLETE]           -----------------------------------------Exon 1.6f  PDB: E:71-107              Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------Exon 1.4  PDB: E:29-70 UniProt: 88-129    ------------------------------------- Transcript 1 (2)
                 1w4v E  -2 HG------S------------------------------TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 107
                             |      |-         -         -         1        11        21        31        41        51        61        71        81        91       101      
                            -1      0                              1                                                                                                          

Chain F from PDB  Type:PROTEIN  Length:108
 aligned with THIOM_HUMAN | Q99757 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:108
                                    68        78        88        98       108       118       128       138       148       158        
          THIOM_HUMAN    59 LTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 166
               SCOP domains d1w4vf_ F: automated matches                                                                                 SCOP domains
               CATH domains 1w4vF00 F:0-107 Glutaredoxin                                                                                 CATH domains
           Pfam domains (1) --Thioredoxin-1w4vF01 F:2-105                                                                             -- Pfam domains (1)
           Pfam domains (2) --Thioredoxin-1w4vF02 F:2-105                                                                             -- Pfam domains (2)
           Pfam domains (3) --Thioredoxin-1w4vF03 F:2-105                                                                             -- Pfam domains (3)
           Pfam domains (4) --Thioredoxin-1w4vF04 F:2-105                                                                             -- Pfam domains (4)
           Pfam domains (5) --Thioredoxin-1w4vF05 F:2-105                                                                             -- Pfam domains (5)
           Pfam domains (6) --Thioredoxin-1w4vF06 F:2-105                                                                             -- Pfam domains (6)
         Sec.struct. author ..eee..hhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhh......eeeeee..eeeeeee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: - UniProt: 50-166                                                                        PROSITE (1)
                PROSITE (2) -----------------------THIOREDOXIN_1      ------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.3a  PDB: F:0-29        -----------------------------------------Exon 1.6f  PDB: F:71-107              Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.4  PDB: F:29-70 UniProt: 88-129    ------------------------------------- Transcript 1 (2)
                 1w4v F   0 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 107
                                     9        19        29        39        49        59        69        79        89        99        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
1a1w4vA00A:-2-107
1b1w4vB00B:-2-107
1c1w4vE00E:-2-107
1d1w4vD00D:-1-107
1e1w4vF00F:0-107
1f1w4vC00C:1-107

(-) Pfam Domains  (1, 6)

Asymmetric Unit

(-) Gene Ontology  (27, 27)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (THIOM_HUMAN | Q99757)
molecular function
    GO:0016671    oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide.
    GO:0033743    peptide-methionine (R)-S-oxide reductase activity    Catalysis of the reaction: peptide-L-methionine + H(2)O + thioredoxin disulfide = peptide-L-methionine (R)-S-oxide + thioredoxin. Can act on oxidized methionine in peptide linkage with specificity for the R enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin.
    GO:0008113    peptide-methionine (S)-S-oxide reductase activity    Catalysis of the reactions: peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (S)-S-oxide + thioredoxin, and L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin. Can act on oxidized methionine in peptide linkage with specificity for the S enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0015035    protein disulfide oxidoreductase activity    Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
biological process
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0031669    cellular response to nutrient levels    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
    GO:0034599    cellular response to oxidative stress    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:0006662    glycerol ether metabolic process    The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0048678    response to axon injury    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0009749    response to glucose    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
    GO:0009725    response to hormone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.
    GO:0001666    response to hypoxia    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
    GO:0007584    response to nutrient    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
    GO:0014070    response to organic cyclic compound    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
    GO:0006979    response to oxidative stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:0000302    response to reactive oxygen species    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals.
    GO:0000103    sulfate assimilation    The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds.
cellular component
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        THIOM_HUMAN | Q997571uvz 1w89

(-) Related Entries Specified in the PDB File

1uvz STRUCTURE OF HUMAN THIOREDOXIN 2