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(-) Description

Title :  SOLUTION STRUCTURE OF CR2 SCR 1-2 BY X-RAY SCATTERING
 
Authors :  H. E. Gilbert, J. T. Eaton, J. P. Hannan, V. M. Holers, S. J. Perkins
Date :  08 Jul 04  (Deposition) - 29 Sep 05  (Release) - 07 Apr 10  (Revision)
Method :  SOLUTION SCATTERING
Resolution :  NOT APPLICABLE
Chains :  Asym. Unit :  A  (6x)
Biol. Unit 1:  A  (1x)
Keywords :  Immune System, Analytical Ultracentrifugation, Thrombospondin Type I Repeats, Constrained Modelling, Glycoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. E. Gilbert, J. T. Eaton, J. P. Hannan, V. M. Holers, S. J. Perkins
Solution Structure Of The Complex Between Cr2 Scr 1-2 And C3D Of Human Complement: An X-Ray Scattering And Sedimentation Modelling Study.
J. Mol. Biol. V. 346 859 2005
PubMed-ID: 15713468  |  Reference-DOI: 10.1016/J.JMB.2004.12.006

(-) Compounds

Molecule 1 - COMPLEMENT RECEPTOR TYPE 2 PRECURSOR,
    ChainsA
    EngineeredYES
    Expression SystemPICHIA PASTORIS
    Expression System Taxid4922
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCR2 SCR 1-2, COMPLEMENT C3D RECEPTOR, EPSTEIN-BARR VIRUS RECEPTOR, EBV RECEPTOR, CD21 ANTIGEN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit (6x)A
Biological Unit 1 (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1W2R)

(-) Sites  (0, 0)

(no "Site" information available for 1W2R)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1W2R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1W2R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1W2R)

(-) PROSITE Motifs  (1, 3)

Asymmetric Unit (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CR2_HUMAN21-84
89-148
152-212
213-273
274-344
408-468
349-407
469-524
525-595
600-659
660-716
717-781
786-845
849-909
910-970
  3A:5-68
A:73-132
A:136-141
-
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 1 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CR2_HUMAN21-84
89-148
152-212
213-273
274-344
408-468
349-407
469-524
525-595
600-659
660-716
717-781
786-845
849-909
910-970
  3A:5-68
A:73-132
A:136-141
-
-
-
-
-
-
-
-
-
-
-
-

(-) Exons   (3, 3)

Asymmetric Unit (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003670581aENSE00001952555chr1:207627575-207627821247CR2_HUMAN1-20201A:1-44
1.3bENST000003670583bENSE00001069650chr1:207639871-207640257387CR2_HUMAN20-1491301A:4-133130
1.4bENST000003670584bENSE00000882434chr1:207641872-207642060189CR2_HUMAN149-212641A:133-142 (gaps)48
1.5ENST000003670585ENSE00000882436chr1:207642145-207642244100CR2_HUMAN212-245340--
1.6ENST000003670586ENSE00000791926chr1:207642495-20764257783CR2_HUMAN245-273290--
1.7bENST000003670587bENSE00000882439chr1:207643040-207643447408CR2_HUMAN273-4091370--
1.8ENST000003670588ENSE00000882440chr1:207644085-207644261177CR2_HUMAN409-468600--
1.9aENST000003670589aENSE00000882441chr1:207644342-20764443291CR2_HUMAN468-498310--
1.10ENST0000036705810ENSE00001167936chr1:207644768-20764484477CR2_HUMAN498-524270--
1.12bENST0000036705812bENSE00001381764chr1:207646117-207646524408CR2_HUMAN524-6601370--
1.14ENST0000036705814ENSE00001167916chr1:207647146-20764723085CR2_HUMAN660-688290--
1.15ENST0000036705815ENSE00001167908chr1:207647586-20764766883CR2_HUMAN688-716290--
1.16aENST0000036705816aENSE00001167899chr1:207648169-207648561393CR2_HUMAN716-8471320--
1.17ENST0000036705817ENSE00001167890chr1:207649579-207649764186CR2_HUMAN847-909630--
1.18ENST0000036705818ENSE00001167878chr1:207651230-207651415186CR2_HUMAN909-971630--
1.19ENST0000036705819ENSE00001167866chr1:207652602-20765262524CR2_HUMAN971-97990--
1.20ENST0000036705820ENSE00001167855chr1:207653323-20765339876CR2_HUMAN979-1004260--
1.21bENST0000036705821bENSE00001246608chr1:207658809-207658917109CR2_HUMAN1004-1033300--
1.22bENST0000036705822bENSE00001841611chr1:207662487-207663240754CR2_HUMAN-00--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:142
 aligned with CR2_HUMAN | P20023 from UniProtKB/Swiss-Prot  Length:1033

    Alignment length:180
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196
            CR2_HUMAN    17 GVLGISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLECPALPMIHNGHHTSENVGSIAPGLSVTYSCESGYLLVGEKIIN 196
               SCOP domains -----d1w2ra1 A:6-69 Complement receptor 2, cr2                       d1w2ra2 A:70-137 Complement receptor 2, cr2                         ------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........................................................................................................................................--------------------------------------..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----SUSHI  PDB: A:5-68 UniProt: 21-84                               ----SUSHI  PDB: A:73-132 UniProt: 89-148                        ---SUSHI  PDB: A:136-141 UniProt: 152-212        PROSITE
           Transcript 1 (1) 1.1a--------------------------------------------------------------------------------------------------------------------------------Exon 1.4b  PDB: A:133-142 (gaps) [INCOMPLETE]    Transcript 1 (1)
           Transcript 1 (2) ---Exon 1.3b  PDB: A:4-133 UniProt: 20-149                                                                                           ----------------------------------------------- Transcript 1 (2)
                 1w2r A   1 EAEAISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKCQYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLE--------------------------------------QKLIS 142
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |  -         -         -         -     | 142
                                                                                                                                                                  137                                    138    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1W2R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1W2R)

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)
Chain A   (CR2_HUMAN | P20023)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0001848    complement binding    Interacting selectively and non-covalently with any component or product of the complement cascade.
    GO:0004875    complement receptor activity    Combining with any component or product of the complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0004888    transmembrane signaling receptor activity    Combining with an extracellular or intracellular signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity or state as part of signal transduction.
    GO:0001618    virus receptor activity    Combining with a virus component and mediating entry of the virus into the cell.
biological process
    GO:0030183    B cell differentiation    The process in which a precursor cell type acquires the specialized features of a B cell. A B cell is a lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity.
    GO:0042100    B cell proliferation    The expansion of a B cell population by cell division. Follows B cell activation.
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0002430    complement receptor mediated signaling pathway    A series of molecular signals generated as a consequence of a component of the complement pathway binding to a complement receptor. Such components include both whole complement proteins and fragments of complement proteins generated through the activity of the complement pathway.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043235    receptor complex    Any protein complex that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CR2_HUMAN | P200231ghq 1ly2 1w2s 2aty 2gsx 3oed

(-) Related Entries Specified in the PDB File

1ghq CR2-C3D COMPLEX STRUCTURE
1ly2 CRYSTAL STRUCTURE OF UNLIGANDED HUMAN CD21 SCR1-SCR2(COMPLEMENT RECEPTOR TYPE 2)
1w2s SOLUTION STRUCTURE OF CR2 SCR 1-2 IN ITS COMPLEX WITH C3D BY X-RAY SCATTERING