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(-) Description

Title :  RESPONSE REGULATOR PLED IN COMPLEX WITH C-DIGMP
 
Authors :  C. Chan, T. Schirmer, U. Jenal
Date :  28 Jun 04  (Deposition) - 18 Nov 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Two-Component System, Ggdef Domain, Cyclic Dinucleotide, Cyclic-Digmp, Allosteric Product Inhibition, Phosphorylation, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chan, R. Paul, D. Samoray, N. Amiot, B. Giese, U. Jenal, T. Schirmer
Structural Basis Of Activity And Allosteric Control Of Diguanylate Cyclase
Proc. Natl. Acad. Sci. Usa V. 101 17084 2004
PubMed-ID: 15569936  |  Reference-DOI: 10.1073/PNAS.0406134101

(-) Compounds

Molecule 1 - STALKED-CELL DIFFERENTIATION CONTROLLING PROTEIN
    Atcc: 19089
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCF
    Expression System Strain: BL21(DE3) PLYSS
    Expression System Taxid: 469008
    Expression System Vector: PRUN
    Expression System Vector Type: PLASMID
    Organism Scientific: CAULOBACTER VIBRIOIDES
    Organism Taxid: 190650
    Strain: CB15
    Synonym: DIGUANYLATE CYCLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1C2E5Ligand/Ion9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9,2TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO-1,9-DIHYDRO-6H-PURIN-6-ONE)
2MG2Ligand/IonMAGNESIUM ION
3ZN1Ligand/IonZINC ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:9 , ASP A:10 , ASP A:53 , MET A:55BINDING SITE FOR RESIDUE MG A 500
2AC2SOFTWAREASP B:9 , ASP B:10 , ASP B:53 , MET B:55BINDING SITE FOR RESIDUE MG B 500
3AC3SOFTWARELYS A:332 , ASN A:335 , HIS A:340 , GLY A:343 , ASP A:344 , GLY A:369 , GLU A:370 , PHE B:331 , LYS B:332 , ASN B:335 , HIS B:340 , ASP B:344 , GLY B:369 , GLU B:370BINDING SITE FOR RESIDUE C2E A 501
4AC4SOFTWAREARG A:178 , ARG A:359 , ASP A:362 , THR A:379 , ASP A:383 , ILE A:387 , ARG A:390 , C2E A:505 , ARG B:164BINDING SITE FOR RESIDUE C2E A 503
5AC5SOFTWAREARG A:148 , GLY A:153 , GLY A:174 , VAL A:175 , HIS A:177 , ARG A:178 , SER A:356 , ASN A:357 , VAL A:358 , ARG A:359 , ALA A:360 , ARG A:390 , C2E A:503BINDING SITE FOR RESIDUE C2E A 505
6AC6SOFTWAREARG A:164 , PRO A:255 , ARG B:178 , ARG B:359 , ASP B:362 , THR B:379 , ASP B:383 , ILE B:387 , ARG B:390 , C2E B:505BINDING SITE FOR RESIDUE C2E B 503
7AC7SOFTWAREARG B:148 , GLY B:153 , GLY B:174 , VAL B:175 , HIS B:177 , ARG B:178 , SER B:356 , ASN B:357 , VAL B:358 , ARG B:359 , ALA B:360 , ARG B:390 , C2E B:503BINDING SITE FOR RESIDUE C2E B 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1W25)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Lys A:105 -Pro A:106
2Arg A:254 -Pro A:255
3Lys B:105 -Pro B:106
4Arg B:254 -Pro B:255

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1W25)

(-) PROSITE Motifs  (2, 6)

Asymmetric/Biological Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RESPONSE_REGULATORYPS50110 Response regulatory domain profile.PLED_CAUCN4-120
 
155-269
 		  4A:4-120
B:4-120
A:155-269
B:155-269
PLED_CAUCR4-120
 
155-269
 		  4A:4-120
B:4-120
A:155-269
B:155-269
2GGDEFPS50887 GGDEF domain profile.PLED_CAUCN319-454
 		  2A:319-454
B:319-454
PLED_CAUCR319-454
 		  2A:319-454
B:319-454

(-) Exons   (0, 0)

(no "Exon" information available for 1W25)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:454
 aligned with PLED_CAUCN | B8GZM2 from UniProtKB/Swiss-Prot  Length:454

    Alignment length:454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              454 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451  | 
           PLED_CAUCN     2 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAA-   -
               SCOP domains d1w25a1 A:2-140 Response regulator PleD, receiver domain                                                                                   d1w25a2 A:141-293 Response regulator PleD, receiver domain                                                                                               d1w25a3 A:294-455 Response regulator PleD, C-terminal domain                                                                                                       SCOP domains
               CATH domains 1w25A01 A:2-142  [code=3.40.50.2300, no name defined]                                                                                        1w25A02 A:143-279  [code=3.40.50.2300, no name defined]                                                                                  1w25A03 A:280-455  [code=3.30.70.270, no name defined]                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh..eeeee......hhhhhhhhhhhh.......eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh....................eeeee..hhhhhhhhhhhhh...eeeee.hhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee....eeeeee...hhhhhhhhhhhhhhhhhh..ee.hhhh.ee...eeeeeee......hhhhhhhhhhhhhhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --RESPONSE_REGULATORY  PDB: A:4-120 UniProt: 4-120                                                                     ----------------------------------RESPONSE_REGULATORY  PDB: A:155-269 UniProt: 155-269                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (1) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGDEF  PDB: A:319-454 UniProt: 319-454                                                                                                  - PROSITE (1)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w25 A   2 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAAH 455
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451    


Chain A from PDB  Type:PROTEIN  Length:454
 aligned with PLED_CAUCR | Q9A5I5 from UniProtKB/Swiss-Prot  Length:454

    Alignment length:454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              454 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451  | 
           PLED_CAUCR     2 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAA-   -
               SCOP domains d1w25a1 A:2-140 Response regulator PleD, receiver domain                                                                                   d1w25a2 A:141-293 Response regulator PleD, receiver domain                                                                                               d1w25a3 A:294-455 Response regulator PleD, C-terminal domain                                                                                                       SCOP domains
               CATH domains 1w25A01 A:2-142  [code=3.40.50.2300, no name defined]                                                                                        1w25A02 A:143-279  [code=3.40.50.2300, no name defined]                                                                                  1w25A03 A:280-455  [code=3.30.70.270, no name defined]                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh..eeeee......hhhhhhhhhhhh.......eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh....................eeeee..hhhhhhhhhhhhh...eeeee.hhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee....eeeeee...hhhhhhhhhhhhhhhhhh..ee.hhhh.ee...eeeeeee......hhhhhhhhhhhhhhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --RESPONSE_REGULATORY  PDB: A:4-120 UniProt: 4-120                                                                     ----------------------------------RESPONSE_REGULATORY  PDB: A:155-269 UniProt: 155-269                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGDEF  PDB: A:319-454 UniProt: 319-454                                                                                                  - PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w25 A   2 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAAH 455
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451    


Chain B from PDB  Type:PROTEIN  Length:454
 aligned with PLED_CAUCN | B8GZM2 from UniProtKB/Swiss-Prot  Length:454

    Alignment length:454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              454 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451  | 
           PLED_CAUCN     2 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAA-   -
               SCOP domains d1w25b1 B:2-140 Response regulator PleD, receiver domain                                                                                   d1w25b2 B:141-293 Response regulator PleD, receiver domain                                                                                               d1w25b3 B:294-455 Response regulator PleD, C-terminal domain                                                                                                       SCOP domains
               CATH domains 1w25B01 B:2-139  [code=3.40.50.2300, no name defined]                                                                                     1w25B02 B:140-282  [code=3.40.50.2300, no name defined]                                                                                        1w25B03 B:283-455  [code=3.30.70.270, no name defined]                                                                                                                        CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------Response_reg-1w25B01 B:156-266                                                                                 ----------------------GGDEF-1w25B05 B:289-448                                                                                                                                         ------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------Response_reg-1w25B02 B:156-266                                                                                 ----------------------GGDEF-1w25B06 B:289-448                                                                                                                                         ------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------Response_reg-1w25B03 B:156-266                                                                                 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------Response_reg-1w25B04 B:156-266                                                                                 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ..eeeee....hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh..eeeee......hhhhhhhhhhhh.......eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh....................eeeee..hhhhhhhhhhhhh...eeeee.hhhhhhhhhhh...eeeee......hhhhhhhhhhh........eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee....eeeeee...hhhhhhhhhhhhhhhhhh..ee......ee...eeeeeee......hhhhhhhhhhhhhhhhhhh...eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --RESPONSE_REGULATORY  PDB: B:4-120 UniProt: 4-120                                                                     ----------------------------------RESPONSE_REGULATORY  PDB: B:155-269 UniProt: 155-269                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (1) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGDEF  PDB: B:319-454 UniProt: 319-454                                                                                                  - PROSITE (1)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w25 B   2 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAAH 455
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451    


Chain B from PDB  Type:PROTEIN  Length:454
 aligned with PLED_CAUCR | Q9A5I5 from UniProtKB/Swiss-Prot  Length:454

    Alignment length:454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              454 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451  | 
           PLED_CAUCR     2 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAA-   -
               SCOP domains d1w25b1 B:2-140 Response regulator PleD, receiver domain                                                                                   d1w25b2 B:141-293 Response regulator PleD, receiver domain                                                                                               d1w25b3 B:294-455 Response regulator PleD, C-terminal domain                                                                                                       SCOP domains
               CATH domains 1w25B01 B:2-139  [code=3.40.50.2300, no name defined]                                                                                     1w25B02 B:140-282  [code=3.40.50.2300, no name defined]                                                                                        1w25B03 B:283-455  [code=3.30.70.270, no name defined]                                                                                                                        CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------Response_reg-1w25B01 B:156-266                                                                                 ----------------------GGDEF-1w25B05 B:289-448                                                                                                                                         ------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------Response_reg-1w25B02 B:156-266                                                                                 ----------------------GGDEF-1w25B06 B:289-448                                                                                                                                         ------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------Response_reg-1w25B03 B:156-266                                                                                 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------Response_reg-1w25B04 B:156-266                                                                                 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ..eeeee....hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh..eeeee......hhhhhhhhhhhh.......eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh....................eeeee..hhhhhhhhhhhhh...eeeee.hhhhhhhhhhh...eeeee......hhhhhhhhhhh........eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee....eeeeee...hhhhhhhhhhhhhhhhhh..ee......ee...eeeeeee......hhhhhhhhhhhhhhhhhhh...eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --RESPONSE_REGULATORY  PDB: B:4-120 UniProt: 4-120                                                                     ----------------------------------RESPONSE_REGULATORY  PDB: B:155-269 UniProt: 155-269                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGDEF  PDB: B:319-454 UniProt: 319-454                                                                                                  - PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w25 B   2 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAAH 455
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Clan: CheY (97)
(-)
Clan: Nucleot_cyclase (14)

(-) Gene Ontology  (12, 23)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (PLED_CAUCN | B8GZM2)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0052621    diguanylate cyclase activity    Catalysis of the reaction: 2 GTP = cyclic di-3',5'-guanylate + 2 diphosphate + 2 H(+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B   (PLED_CAUCR | Q9A5I5)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0052621    diguanylate cyclase activity    Catalysis of the reaction: 2 GTP = cyclic di-3',5'-guanylate + 2 diphosphate + 2 H(+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PLED_CAUCN | B8GZM2: 2v0n 2wb4
        PLED_CAUCR | Q9A5I5: 2v0n 2wb4

(-) Related Entries Specified in the PDB File

2v0n ACTIVATED RESPONSE REGULATOR PLED IN COMPLEX WITH C-DIGMP AND GTP-ALPHA-S
2wb4 ACTIVATED DIGUANYLATE CYCLASE PLED IN COMPLEX WITH C-DI-GMP