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(-) Description

Title :  SCHISTOSOMA MANSONI FATTY ACID BINDING PROTEIN IN COMPLEX WITH ARACHIDONIC ACID
 
Authors :  F. Angelucci, K. A. Johnson, P. Baiocco, A. E. Miele, A. Bellelli
Date :  29 Apr 04  (Deposition) - 23 Sep 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Fatty Acid Binding Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Angelucci, K. A. Johnson, P. Baiocco, A. E. Miele, M. Brunori, C. Valle, F. Vigorosi, A. R. Troiani, P. Liberti, D. Cioli, M. Q. Klinkert, A. Bellelli
Schistosoma Mansoni Fatty Acid Binding Protein: Specificity And Functional Control As Revealed By Crystallographic Structure
Biochemistry V. 43 13000 2004
PubMed-ID: 15476393  |  Reference-DOI: 10.1021/BI048505F

(-) Compounds

Molecule 1 - FATTY ACID BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST17
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Common: BLOOD FLUKE
    Organism Scientific: SCHISTOSOMA MANSONI
    Organism Taxid: 6183
    Other Details: 2 ADDITIONAL AMINO ACIDS AT THE N-TERMINUS
    Other Details - Source: CDNA
    Strain: BRAZILIAN BH
    Synonym: SM14

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ACD1Ligand/IonARACHIDONIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:20 , LEU A:23 , VAL A:25 , GLY A:33 , SER A:55 , LYS A:58 , SER A:75 , ASP A:76 , ARG A:78 , ILE A:105 , ARG A:107 , THR A:116 , ARG A:127 , TYR A:129 , HOH A:2075 , HOH A:2076BINDING SITE FOR RESIDUE ACD A1134

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VYG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VYG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric/Biological Unit (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_FABP_SCHMA_001 *M20TFABP_SCHMA  ---  ---AM20T
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FABPPS00214 Cytosolic fatty-acid binding proteins signature.FABP_SCHMA6-23  1A:6-23

(-) Exons   (0, 0)

(no "Exon" information available for 1VYG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:135
 aligned with FABP_SCHMA | P29498 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:135
                              1                                                                                                                                    
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128     
           FABP_SCHMA     - --MSSFLGKWKLSESHNFDAVMSKLGVSWATRQIGNTVTPTVTFTMDGDKMTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQTQVDPKNTTVIVREVDGDTMKTTVTVGDVTAIRNYKRLS 133
               SCOP domains d1vyga_ A: Fatty acid-binding protein Sm14                                                                                              SCOP domains
               CATH domains 1vygA00 A:-1-133  [code=2.40.128.20, no name defined]                                                                                   CATH domains
               Pfam domains ------Lipocalin-1vygA01 A:5-132                                                                                                       - Pfam domains
         Sec.struct. author .......eeeeeeeeehhhhhhhh...hhhhhhhhhhh..eeeeeee..eeeeeee....eeeeee.....eeee.....eeeeeeee....eeeeeee....eeeeeeeee..eeeeeeee..eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------T----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------FABP  PDB: A:6-23 -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vyg A  -1 GSMSSFLGKWKLSESHNFDAVMSKLGVSWATRQIGNTVTPTVTFTMDGDKMTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQTQVDPKNTTVIVREVDGDTMKTTVTVGDVTAIRNYKRLS 133
                                     8        18        28        38        48        58        68        78        88        98       108       118       128
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Calycin (163)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FABP_SCHMA | P29498)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1vyg
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FABP_SCHMA | P29498: 1vyf 2poa

(-) Related Entries Specified in the PDB File

1vyf SCHISTOSOMA MANSONI FATTY ACID BINDING PROTEIN IN COMPLEX WITH OLEIC ACID