1VSV - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HOLO-GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM CRYPTOSPORIDIUM PARVUM

Authors :   W. J. Cook, O. Senkovich, D. Chattopadhyay

Date :   11 Mar 08 (Deposition) - 24 Mar 09 (Release) - 18 Jul 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A,B  (1x)
Biol. Unit 3: C,D  (1x)
Biol. Unit 4: A,D  (1x)
Biol. Unit 5: B,C  (1x)

Keywords :   Dehyrogenase, Glycolysis, Glycolytic Enzyme, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. J. Cook, O. Senkovich, D. Chattopadhyay
An Unexpected Phosphate Binding Site In Glyceraldehyde 3-Phosphate Dehydrogenase: Crystal Structures Of Apo, Holo And Ternary Complex Of Cryptosporidium Parvum Enzyme
Bmc Struct. Biol. V. 9 9 2009
PubMed-ID: 19243605 | Reference-DOI: 10.1186/1472-6807-9-9

Molecule 1 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
	Chains	:	A, B, C, D
	EC Number	:	1.2.1.12
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	CRYPTOSPORIDIUM PARVUM
	Organism Taxid	:	5807
	Synonym	:	GAPDH

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:	A	B
Biological Unit 3 (1x)	:			C	D
Biological Unit 4 (1x)	:	A			D
Biological Unit 5 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Biological Unit 4 (1, 2)

No.	Name	Count	Type	Full Name
1	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:8 , GLY A:9 , PHE A:10 , GLY A:11 , ARG A:12 , ILE A:13 , ASN A:33 , ASP A:34 , PRO A:35 , PHE A:36 , MET A:37 , LYS A:79 , SER A:97 , THR A:98 , GLY A:99 , PHE A:101 , SER A:121 , ALA A:122 , CYS A:153 , ALA A:184 , ASN A:319 , TYR A:323 , HOH A:351 , HOH A:373 , HOH A:425 , HOH A:459 , HOH A:494 , HOH A:517 , HOH A:601 , HOH D:464	BINDING SITE FOR RESIDUE NAD A 340
2	AC2	SOFTWARE	ASN B:8 , GLY B:9 , GLY B:11 , ARG B:12 , ILE B:13 , ASN B:33 , ASP B:34 , PRO B:35 , PHE B:36 , MET B:37 , LYS B:79 , SER B:97 , THR B:98 , GLY B:99 , PHE B:101 , SER B:121 , ALA B:122 , CYS B:153 , ASN B:319 , TYR B:323 , HOH B:461 , HOH B:626	BINDING SITE FOR RESIDUE NAD B 340
3	AC3	SOFTWARE	ASN C:8 , GLY C:9 , PHE C:10 , GLY C:11 , ARG C:12 , ILE C:13 , ASN C:33 , ASP C:34 , PRO C:35 , PHE C:36 , MET C:37 , LYS C:79 , SER C:97 , THR C:98 , GLY C:99 , PHE C:101 , SER C:121 , ALA C:122 , CYS C:153 , ALA C:184 , ASN C:319 , TYR C:323 , HOH C:717	BINDING SITE FOR RESIDUE NAD C 340
4	AC4	SOFTWARE	HOH A:415 , ASN D:8 , GLY D:9 , PHE D:10 , GLY D:11 , ARG D:12 , ILE D:13 , ASN D:33 , ASP D:34 , PRO D:35 , PHE D:36 , MET D:37 , ALA D:78 , LYS D:79 , SER D:97 , THR D:98 , GLY D:99 , PHE D:101 , SER D:121 , ALA D:122 , CYS D:153 , ALA D:184 , ASN D:319 , TYR D:323 , HOH D:345 , HOH D:358 , HOH D:364 , HOH D:379 , HOH D:385 , HOH D:457 , HOH D:474 , HOH D:510 , HOH D:602 , HOH D:638	BINDING SITE FOR RESIDUE NAD D 340

(no "SS Bond" information available for 1VSV)

(no "Cis Peptide Bond" information available for 1VSV)

(no "SAP(SNP)/Variant" information available for 1VSV)

(no "PROSITE Motif" information available for 1VSV)

(no "Exon" information available for 1VSV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:338
 aligned with Q7YYQ9_CRYPV | Q7YYQ9 from UniProtKB/TrEMBL  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
         Q7YYQ9_CRYPV     2 TATLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRGL 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1vsvA01 A:2-150,A:320-339 NAD(P)-binding Rossmann-like Domain                                                                                        1vsvA02 A:151-319 Dihydrodipicolinate Reductase; domain 2                                                                                                                1vsvA01              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhh..........eeee..eeee..eeeeee...hhhhh........eeee......hhhhhhhhhhhh..eeee...............hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee................hhhhhh......eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhh......eeee....hhhhhh.....eeee.hhhee....eeeeeeee..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vsv A   2 TATLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRGL 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331

Chain B from PDB  Type:PROTEIN  Length:338
 aligned with Q7YYQ9_CRYPV | Q7YYQ9 from UniProtKB/TrEMBL  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
         Q7YYQ9_CRYPV     2 TATLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRGL 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1vsvB01 B:2-150,B:320-339 NAD(P)-binding Rossmann-like Domain                                                                                        1vsvB02 B:151-319 Dihydrodipicolinate Reductase; domain 2                                                                                                                1vsvB01              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhh..........eeee..eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee...............hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeee..................hhhhhhhhhh.eee..hhhhhhhhhhhhhh..eeeeeee......eeeeeeeee....hhhhhhhhhhhhhh......eeee....hhhhhh.....eeee.hhheeee..eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vsv B   2 TATLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRGL 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331

Chain C from PDB  Type:PROTEIN  Length:338
 aligned with Q7YYQ9_CRYPV | Q7YYQ9 from UniProtKB/TrEMBL  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
         Q7YYQ9_CRYPV     2 TATLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRGL 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1vsvC01 C:2-150,C:320-339 NAD(P)-binding Rossmann-like Domain                                                                                        1vsvC02 C:151-319 Dihydrodipicolinate Reductase; domain 2                                                                                                                1vsvC01              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhh..........eeee..eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhhh..eeee...............hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeee..................hhhhh......eee..hhhhhhhhhhhhhh..eeeeeee......eeeeeeeee....hhhhhhhhhhhhhh......eeee....hhhhhh.....eeee.hhhee....eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vsv C   2 TATLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRGL 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331

Chain D from PDB  Type:PROTEIN  Length:338
 aligned with Q7YYQ9_CRYPV | Q7YYQ9 from UniProtKB/TrEMBL  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
         Q7YYQ9_CRYPV     2 TATLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRGL 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1vsvD01 D:2-150,D:320-339 NAD(P)-binding Rossmann-like Domain                                                                                        1vsvD02 D:151-319 Dihydrodipicolinate Reductase; domain 2                                                                                                                1vsvD01              CATH domains
           Pfam domains (1) -Gp_dh_N-1vsvD05 D:3-153                                                                                                                                ----Gp_dh_C-1vsvD01 D:158-317                                                                                                                                       ---------------------- Pfam domains (1)
           Pfam domains (2) -Gp_dh_N-1vsvD06 D:3-153                                                                                                                                ----Gp_dh_C-1vsvD02 D:158-317                                                                                                                                       ---------------------- Pfam domains (2)
           Pfam domains (3) -Gp_dh_N-1vsvD07 D:3-153                                                                                                                                ----Gp_dh_C-1vsvD03 D:158-317                                                                                                                                       ---------------------- Pfam domains (3)
           Pfam domains (4) -Gp_dh_N-1vsvD08 D:3-153                                                                                                                                ----Gp_dh_C-1vsvD04 D:158-317                                                                                                                                       ---------------------- Pfam domains (4)
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhh..........eeee..eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee...............hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee...........hhhhh.hhhhh......eeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheeee..eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vsv D   2 TATLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRGL 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 1VSV)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Dihydrodipicolinate Reductase; domain 2 (182)

Homologous Superfamily: Dihydrodipicolinate Reductase; domain 2 (178)

Cryptosporidium parvum. Organism_taxid: 5807. (3)

1a	1vsvA02	A:151-319
1b	1vsvB02	B:151-319
1c	1vsvC02	C:151-319
1d	1vsvD02	D:151-319

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Cryptosporidium parvum. Organism_taxid: 5807. (5)

2a	1vsvA01	A:2-150,A:320-339
2b	1vsvB01	B:2-150,B:320-339
2c	1vsvC01	C:2-150,C:320-339
2d	1vsvD01	D:2-150,D:320-339

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GADPH_aa-bio_dh (59)

Family: Gp_dh_C (38)

Cryptosporidium parvum (2)

1a	Gp_dh_C-1vsvD01	D:158-317
1b	Gp_dh_C-1vsvD02	D:158-317
1c	Gp_dh_C-1vsvD03	D:158-317
1d	Gp_dh_C-1vsvD04	D:158-317

Clan: NADP_Rossmann (1239)

Family: Gp_dh_N (38)

Cryptosporidium parvum (2)

2a	Gp_dh_N-1vsvD05	D:3-153
2b	Gp_dh_N-1vsvD06	D:3-153
2c	Gp_dh_N-1vsvD07	D:3-153
2d	Gp_dh_N-1vsvD08	D:3-153

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q7YYQ9_CRYPV | Q7YYQ9)

molecular function
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0004365	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
	GO:0006006	glucose metabolic process	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1vsv)

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Access by PDB/NDB ID
	1vsv
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	Q7YYQ9_CRYPV \| Q7YYQ9
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	1.2.1.12
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		Interatomic Contacts of Structural Units	:	CSU
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	Q7YYQ9_CRYPV \| Q7YYQ9
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UniProtKB/TrEMBL
	Q7YYQ9_CRYPV \| Q7YYQ9	:	1vsu 3cif

1vsv	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE WITH NO NAD+
3cif	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH CYS 153 REPLACED BY SER COMPLEXED WITH NAD+ AND D- GLYCERALDEHYDE-3-PHOSPHATE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (2, 8)

Pfam Domains (2, 8)

Gene Ontology (10, 10)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File