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(-) Description

Title :  CRYSTAL STRUCTURE OF A CBS DOMAIN PAIR/ACT DOMAIN PROTEIN (TM0892) FROM THERMOTOGA MARITIMA AT 1.70 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  17 Feb 05  (Deposition) - 15 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Cbs Domain Protein/Act Domain Protein (Tm0892) From Thermotoga Maritima At 1. 70 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CBS DOMAIN PROTEIN/ACT DOMAIN PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM0892
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1VR9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VR9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VR9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VR9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VR9)

(-) Exons   (0, 0)

(no "Exon" information available for 1VR9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:121
 aligned with Q9WZZ4_THEMA | Q9WZZ4 from UniProtKB/TrEMBL  Length:201

    Alignment length:121
                                    10        20        30        40        50        60        70        80        90       100       110       120 
         Q9WZZ4_THEMA     1 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALA 121
               SCOP domains d1vr9a3 A:1-121 Hypothetical protein TM0892, CBS tandem                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.....eee...hhhhhhhhhhhh...eeeee.....eeeeee.hhhh.......hhhhh......ee...hhhhhhhhhhhh...eeeee.....eeeeeehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vr9 A   1 mKVKKWVTQDFPmVEESATVRECLHRmRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEmRLKGAVSLHDFLEALIEALA 121
                            |       10  |     20      | 30        40        50        60        70        80        90       100|      110       120 
                            |          13-MSE        27-MSE                                                                   101-MSE                
                            1-MSE                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:121
 aligned with Q9WZZ4_THEMA | Q9WZZ4 from UniProtKB/TrEMBL  Length:201

    Alignment length:121
                                    10        20        30        40        50        60        70        80        90       100       110       120 
         Q9WZZ4_THEMA     1 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALA 121
               SCOP domains d1vr9b3 B:1-121 Hypothetical protein TM0892, CBS tandem                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------------------------------CBS-1vr9B01 B:65-118                                  --- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------CBS-1vr9B02 B:65-118                                  --- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------CBS-1vr9B03 B:65-118                                  --- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------CBS-1vr9B04 B:65-118                                  --- Pfam domains (4)
         Sec.struct. author .hhhhhh.....eee...hhhhhhhhhhhh...eeeee.....eeeeee.hhhh..................ee...hhhhhhhhhhhh...eeeee.....eeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vr9 B   1 mKVKKWVTQDFPmVEESATVRECLHRmRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEmRLKGAVSLHDFLEALIEALA 121
                            |       10  |     20      | 30        40        50        60        70        80        90       100|      110       120 
                            1-MSE      13-MSE        27-MSE                                                                   101-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1VR9)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: CBS] (51)
(-)
Family: CBS (51)
(-)
Thermotoga maritima (3)
1aCBS-1vr9B01B:65-118
1bCBS-1vr9B02B:65-118
1cCBS-1vr9B03B:65-118
1dCBS-1vr9B04B:65-118

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9WZZ4_THEMA | Q9WZZ4)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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