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(-) Description

Title :  CRYSTAL STRUCTURE OF MCSG TARGET APC22750 FROM BACILLUS CEREUS
 
Authors :  X. Yang, J. S. Brunzelle, L. K. Mcnamara, G. Minasov, L. Shuvalova, F. R. W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)
Date :  31 Jan 05  (Deposition) - 08 Feb 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Structural Genomics, Pentamer, Hypothetical Protein, Psi, Protein Structure Initiative, The Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. S. Brunzelle, L. K. Mcnamara, X. Yang, G. Minasov, L. Shuvalova, F. R. Collart, W. F. Anderson, Mcsg
Crystal Structure Of Mcsg Target Apc22750 From Bacillus Cereus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN APC22750
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 226900
    Strain: ATCC 14579

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1VR4)

(-) Sites  (0, 0)

(no "Site" information available for 1VR4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VR4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VR4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VR4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VR4)

(-) Exons   (0, 0)

(no "Exon" information available for 1VR4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
 aligned with Y1012_BACCR | Q81H14 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:103
                                    10        20        30        40        50        60        70        80        90       100   
          Y1012_BACCR     1 MIVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVRDVVGGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI 103
               SCOP domains d1vr4a1 A:1-103 Hypothetical protein BC1012                                                             SCOP domains
               CATH domains 1vr4A00 A:1-103 Hypothetical protein apc22750. Chain B                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee............eeeeeeeeeeeehhhhhhhhhhhhh.eee.........hhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeehhheeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1vr4 A   1 MIVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVRDVVGGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI 103
                                    10        20        30        40        50        60        70        80        90       100   


Chain B from PDB  Type:PROTEIN  Length:82
 aligned with Y1012_BACCR | Q81H14 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:103
                                    10        20        30        40        50        60        70        80        90       100   
          Y1012_BACCR     1 MIVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVRDVVGGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI 103
               SCOP domains d1vr4b_ B: automated matches                                                                            SCOP domains
               CATH domains 1vr4B00 B:1-103 Hypothetical                      protein apc22750. Chain B                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee............eeeeeeeeeeee..---------------------hhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.....eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1vr4 B   1 MIVTTTSGIQGKEIIEYIDIVNGEAIMGA---------------------ESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI 103
                                    10        20        |-         -         -|       60        70        80        90       100   
                                                       29                    51                                                    


Chain C from PDB  Type:PROTEIN  Length:99
 aligned with Y1012_BACCR | Q81H14 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:103
                                    10        20        30        40        50        60        70        80        90       100   
          Y1012_BACCR     1 MIVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVRDVVGGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI 103
               SCOP domains d1vr4c_ C: automated matches                                                                            SCOP domains
               CATH domains 1vr4C00 C:1-103 Hypothetical protein ap    c22750. Chain B                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee............eeeeeeeeeee...eee..ee...----.....hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.....eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1vr4 C   1 MIVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASV----GGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI 103
                                    10        20        30        |-   |    50        60        70        80        90       100   
                                                                 39   44                                                           


Chain D from PDB  Type:PROTEIN  Length:103
 aligned with Y1012_BACCR | Q81H14 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:103
                                    10        20        30        40        50        60        70        80        90       100   
          Y1012_BACCR     1 MIVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVRDVVGGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI 103
               SCOP domains d1vr4d_ D: automated matches                                                                            SCOP domains
               CATH domains 1vr4D00 D:1-103 Hypothetical protein apc22750. Chain B                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee............eeeeeeeeeee...eee..ee............hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeehhheeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1vr4 D   1 MIVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVRDVVGGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI 103
                                    10        20        30        40        50        60        70        80        90       100   


Chain E from PDB  Type:PROTEIN  Length:93
 aligned with Y1012_BACCR | Q81H14 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:103
                                    10        20        30        40        50        60        70        80        90       100   
          Y1012_BACCR     1 MIVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVRDVVGGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI 103
               SCOP domains d1vr4e_ E: automated matches                                                                            SCOP domains
               CATH domains 1vr4E00 E:1-103 Hypothetical           protein apc22750. Chain B                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee............eeeeeeeeeee...----------..eee.........hhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.....eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1vr4 E   1 MIVTTTSGIQGKEIIEYIDIVNGEAIMGA----------RDVVGGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI 103
                                    10        20        |-        40        50        60        70        80        90       100   
                                                       29         40
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 5)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1VR4)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1VR4)

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