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(-) Description

Title :  CRYSTAL STRUCTURE OF AN ALPHA/BETA DOMAIN OF A PUTATIVE PYRUVATE KINASE (AF0103) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 1.30 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  14 Oct 04  (Deposition) - 26 Oct 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Keywords :  Putative Pyruvate Kinase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Flavoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Np_068944. 1) Fro Archaeoglobus Fulgidus At 1. 30 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN AF0103
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_068944.1
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 224325
    Strain: DSM 4304

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
2MSE7Mod. Amino AcidSELENOMETHIONINE
3UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (3, 54)
No.NameCountTypeFull Name
1FMN6Ligand/IonFLAVIN MONONUCLEOTIDE
2MSE42Mod. Amino AcidSELENOMETHIONINE
3UNL6Ligand/IonUNKNOWN LIGAND

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:38 , SER A:39 , SER A:40 , TYR A:41 , GLY A:42 , ASP A:43 , THR A:44 , VAL A:60 , THR A:61 , TYR A:62 , HIS A:94 , ARG A:121 , HIS A:126 , LYS A:129 , VAL A:130 , GLU A:133 , MSE A:137 , GLY A:154 , ARG A:155 , SER A:156 , ARG A:157 , GLY A:158 , UNL A:601 , HOH A:631BINDING SITE FOR RESIDUE FMN A 500
2AC2SOFTWARETYR A:62 , PHE A:66 , HIS A:94 , ARG A:101 , ARG A:121 , LYS A:129 , FMN A:500 , HOH A:613 , HOH A:739BINDING SITE FOR RESIDUE UNL A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VP8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VP8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VP8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VP8)

(-) Exons   (0, 0)

(no "Exon" information available for 1VP8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:190
 aligned with O30133_ARCFU | O30133 from UniProtKB/TrEMBL  Length:189

    Alignment length:190
                             1                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189
         O30133_ARCFU     - -MEKKIVYFNKPGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHGLKVCVEITIMAADSGAIPIEEVVAVGGRSRGADTAVVIRPAHMNNFFDAEIKEIICMPRNKR 189
               SCOP domains d1vp8a_ A: Hypothetical protein AF0103                                                                                                                                                         SCOP domains
               CATH domains 1vp8A00 A:0-189 PK C-terminal domain-like                                                                                                                                                      CATH domains
               Pfam domains ----------------PK_C-1vp8A01 A:16-166                                                                                                                                  ----------------------- Pfam domains
         Sec.struct. author ......eee...hhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh...eeeeee.............hhhhhhhhhhh..eeee.......hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee.......eeeeee.....hhhhheeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vp8 A   0 HmEKKIVYFNKPGRENTEETLRLAVERAKELGIKHLVVASSYGDTAmKALEmAEGLEVVVVTYHTGFVREGENTmPPEVEEELRKRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHGLKVCVEITImAADSGAIPIEEVVAVGGRSRGADTAVVIRPAHmNNFFDAEIKEIICmPRNKR 189
                             |       9        19        29        39      | 49 |      59        69    |   79        89        99       109       119       129       139       149       159       169|      179    |  189
                             |                                           46-MSE|                     74-MSE                                                        137-MSE                          170-MSE       184-MSE 
                             1-MSE                                            51-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: PK_C] (19)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (O30133_ARCFU | O30133)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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