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(-) Description

Title :  CRYSTAL STRUCTURE OF EXODEOXYRIBONUCLEASE VII SMALL SUBUNIT (NP_881400.1) FROM BORDETELLA PERTUSSIS AT 2.40 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  14 Oct 04  (Deposition) - 26 Oct 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Np_881400. 1, Exodeoxyribonuclease Vii Small Subunit E. C. 3. 1. 11. 6, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Psi, Protein Structure Initiative, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Exodeoxyribonuclease Vii Small Subunit E. C. 3. 1. 11. 6 (Np_881400. 1) From Bordetella Pertussis At 2. 4 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - EXODEOXYRIBONUCLEASE VII SMALL SUBUNIT
    Chains: A, B, C, D, E, F
    EC Number: 3.1.11.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_881400.1
    Organism Scientific: BORDETELLA PERTUSSIS TOHAMA I
    Organism Taxid: 257313
    Strain: TOHAMA I

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1VP7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VP7)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg E:78 -Pro E:79
2Arg F:78 -Pro F:79

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VP7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VP7)

(-) Exons   (0, 0)

(no "Exon" information available for 1VP7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:68
 aligned with EX7S_BORPA | Q7W7Q2 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:68
                                    22        32        42        52        62        72        
            EX7S_BORPA   13 ARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL 80
               SCOP domains d1vp7a_ A: Exonuclease VII small subunit XseB                        SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  1vp7 A 13 ARPLPQDFETALAELESLVSAmENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL 80
                                    22        32 |      42        52        62        72        
                                                34-MSE                                          


Chain A from PDB  Type:PROTEIN  Length:68
 aligned with EX7S_BORPE | Q7VV85 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:68
                                    22        32        42        52        62        72        
            EX7S_BORPE   13 ARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL 80
               SCOP domains d1vp7a_ A: Exonuclease VII small subunit XseB                        SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  1vp7 A 13 ARPLPQDFETALAELESLVSAmENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL 80
                                    22        32 |      42        52        62        72        
                                                34-MSE                                          


Chain B from PDB  Type:PROTEIN  Length:77
 aligned with EX7S_BORPA | Q7W7Q2 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:77
                                    19        29        39        49        59        69        79       
            EX7S_BORPA   10 QTDARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPLDPAALD 86
               SCOP domains d1vp7b_ B: Exonuclease VII small subunit XseB                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  1vp7 B 10 QTDARPLPQDFETALAELESLVSAmENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPLDPAALD 86
                                    19        29    |   39        49        59        69        79       
                                                   34-MSE                                                


Chain B from PDB  Type:PROTEIN  Length:77
 aligned with EX7S_BORPE | Q7VV85 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:77
                                    19        29        39        49        59        69        79       
            EX7S_BORPE   10 QTDARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPLDPAALD 86
               SCOP domains d1vp7b_ B: Exonuclease VII small subunit XseB                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  1vp7 B 10 QTDARPLPQDFETALAELESLVSAmENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPLDPAALD 86
                                    19        29    |   39        49        59        69        79       
                                                   34-MSE                                                


Chain C from PDB  Type:PROTEIN  Length:71
 aligned with EX7S_BORPA | Q7W7Q2 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:71
                                    18        28        38        48        58        68        78 
            EX7S_BORPA    9 PQTDARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRP 79
               SCOP domains d1vp7c_ C: Exonuclease VII small subunit XseB                           SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1vp7 C  9 PQTDARPLPQDFETALAELESLVSAmENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRP 79
                                    18        28     |  38        48        58        68        78 
                                                    34-MSE                                         


Chain C from PDB  Type:PROTEIN  Length:71
 aligned with EX7S_BORPE | Q7VV85 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:71
                                    18        28        38        48        58        68        78 
            EX7S_BORPE    9 PQTDARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRP 79
               SCOP domains d1vp7c_ C: Exonuclease VII small subunit XseB                           SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1vp7 C  9 PQTDARPLPQDFETALAELESLVSAmENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRP 79
                                    18        28     |  38        48        58        68        78 
                                                    34-MSE                                         


Chain D from PDB  Type:PROTEIN  Length:69
 aligned with EX7S_BORPA | Q7W7Q2 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:72
                                    22        32        42        52        62        72        82  
            EX7S_BORPA   13 ARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPLDPAA 84
               SCOP domains d1vp7d_ D: Exonuclease    VII small subunit XseB                         SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh..---.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1vp7 D 13 ARPLPQDFETALAELESLVSAmE---LPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPLDPAA 84
                                    22        32 ||   | 42        52        62        72        82  
                                                34-MSE9                                             
                                                 35                                                 


Chain D from PDB  Type:PROTEIN  Length:69
 aligned with EX7S_BORPE | Q7VV85 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:72
                                    22        32        42        52        62        72        82  
            EX7S_BORPE   13 ARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPLDPAA 84
               SCOP domains d1vp7d_ D: Exonuclease    VII small subunit XseB                         SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh..---.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1vp7 D 13 ARPLPQDFETALAELESLVSAmE---LPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPLDPAA 84
                                    22        32 ||   | 42        52        62        72        82  
                                                34-MSE9                                             
                                                 35                                                 


Chain E from PDB  Type:PROTEIN  Length:67
 aligned with EX7S_BORPA | Q7W7Q2 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:67
                                    22        32        42        52        62        72       
            EX7S_BORPA   13 ARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRP 79
               SCOP domains d1vp7e_ E: Exonuclease VII small subunit XseB                       SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1vp7 E 13 ARPLPQDFETALAELESLVSAmENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRP 79
                                    22        32 |      42        52        62        72       
                                                34-MSE                                         


Chain E from PDB  Type:PROTEIN  Length:67
 aligned with EX7S_BORPE | Q7VV85 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:67
                                    22        32        42        52        62        72       
            EX7S_BORPE   13 ARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRP 79
               SCOP domains d1vp7e_ E: Exonuclease VII small subunit XseB                       SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1vp7 E 13 ARPLPQDFETALAELESLVSAmENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRP 79
                                    22        32 |      42        52        62        72       
                                                34-MSE                                         


Chain F from PDB  Type:PROTEIN  Length:65
 aligned with EX7S_BORPA | Q7W7Q2 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:67
                                    22        32        42        52        62        72       
            EX7S_BORPA   13 ARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRP 79
               SCOP domains d1vp7f_ F: Exonuclease V  II small subunit XseB                     SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------Exonuc_VII_S-1vp7  F01 F:20-72                       ------- Pfam domains (1)
           Pfam domains (2) -------Exonuc_VII_S-1vp7  F02 F:20-72                       ------- Pfam domains (2)
           Pfam domains (3) -------Exonuc_VII_S-1vp7  F03 F:20-72                       ------- Pfam domains (3)
           Pfam domains (4) -------Exonuc_VII_S-1vp7  F04 F:20-72                       ------- Pfam domains (4)
           Pfam domains (5) -------Exonuc_VII_S-1vp7  F05 F:20-72                       ------- Pfam domains (5)
           Pfam domains (6) -------Exonuc_VII_S-1vp7  F06 F:20-72                       ------- Pfam domains (6)
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh--.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1vp7 F 13 ARPLPQDFETALAELESLVSAmEN--LPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRP 79
                                    22        32 | |  | 42        52        62        72       
                                                34-MSE9                                        
                                                  36                                           


Chain F from PDB  Type:PROTEIN  Length:65
 aligned with EX7S_BORPE | Q7VV85 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:67
                                    22        32        42        52        62        72       
            EX7S_BORPE   13 ARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRP 79
               SCOP domains d1vp7f_ F: Exonuclease V  II small subunit XseB                     SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------Exonuc_VII_S-1vp7  F01 F:20-72                       ------- Pfam domains (1)
           Pfam domains (2) -------Exonuc_VII_S-1vp7  F02 F:20-72                       ------- Pfam domains (2)
           Pfam domains (3) -------Exonuc_VII_S-1vp7  F03 F:20-72                       ------- Pfam domains (3)
           Pfam domains (4) -------Exonuc_VII_S-1vp7  F04 F:20-72                       ------- Pfam domains (4)
           Pfam domains (5) -------Exonuc_VII_S-1vp7  F05 F:20-72                       ------- Pfam domains (5)
           Pfam domains (6) -------Exonuc_VII_S-1vp7  F06 F:20-72                       ------- Pfam domains (6)
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh--.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1vp7 F 13 ARPLPQDFETALAELESLVSAmEN--LPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRP 79
                                    22        32 | |  | 42        52        62        72       
                                                34-MSE9                                        
                                                  36
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1VP7)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: no clan defined [family: Exonuc_VII_S] (1)

(-) Gene Ontology  (8, 16)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (EX7S_BORPE | Q7VV85)
molecular function
    GO:0008855    exodeoxyribonuclease VII activity    Catalysis of the exonucleolytic cleavage in either 5' to 3' or 3' to 5' direction to yield 5'-phosphomononucleotides.
    GO:0004527    exonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0006308    DNA catabolic process    The cellular DNA metabolic process resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009318    exodeoxyribonuclease VII complex    An enzyme complex that catalyzes exonucleolytic cleavage in either 5' to 3' or 3' to 5' direction to yield nucleoside 5'-phosphates; it prefers single-stranded DNA.

Chain A,B,C,D,E,F   (EX7S_BORPA | Q7W7Q2)
molecular function
    GO:0008855    exodeoxyribonuclease VII activity    Catalysis of the exonucleolytic cleavage in either 5' to 3' or 3' to 5' direction to yield 5'-phosphomononucleotides.
    GO:0004527    exonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0006308    DNA catabolic process    The cellular DNA metabolic process resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009318    exodeoxyribonuclease VII complex    An enzyme complex that catalyzes exonucleolytic cleavage in either 5' to 3' or 3' to 5' direction to yield nucleoside 5'-phosphates; it prefers single-stranded DNA.

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  1vp7
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  3.1.11.6
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    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  EX7S_BORPE | Q7VV85
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1VP7)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1VP7)