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Title :   CRYSTAL STRUCTURE OF VITELLINE MEMBRANE OUTER LAYER PROTEIN I (VMO-I): A FOLDING MOTIF WITH HOMOLOGOUS GREEK KEY STRUCTURES RELATED BY AN INTERNAL THREE-FOLD SYMMETRY

Authors :   T. Shimizu, D. G. Vassylyev, S. Kido, Y. Doi, K. Morikawa

Date :   06 Jan 94 (Deposition) - 31 May 94 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Shimizu, D. G. Vassylyev, S. Kido, Y. Doi, K. Morikawa
Crystal Structure Of Vitelline Membrane Outer Layer Protein I (Vmo-I): A Folding Motif With Homologous Greek Key Structures Related By An Internal Three-Fold Symmetry.
Embo J. V. 13 1003 1994
PubMed-ID: 8131734
(for further references see the PDB file header)

Molecule 1 - VITELLINE MEMBRANE OUTER LAYER PROTEIN I
	Chains	:	A, B
	Engineered	:	YES
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1VMO)

(no "Site" information available for 1VMO)

Asymmetric Unit

No.	Residues
1	A:26	-	A:57
2	A:79	-	A:110
3	A:133	-	A:161
4	A:136	-	A:162
5	B:26	-	B:57
6	B:79	-	B:110
7	B:133	-	B:161
8	B:136	-	B:162

(no "Cis Peptide Bond" information available for 1VMO)

(no "SAP(SNP)/Variant" information available for 1VMO)

(no "PROSITE Motif" information available for 1VMO)

Asymmetric Unit (3, 6)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSGALT00000030078	1	ENSGALE00000182181	chr1:185051415-185051603	189	VMO1_CHICK	1-57	57	2	A:1-37 B:1-37	37 37
1.2	ENSGALT00000030078	2	ENSGALE00000182183	chr1:185052274-185052368	95	VMO1_CHICK	58-89	32	2	A:38-69 B:38-69	32 32
1.3	ENSGALT00000030078	3	ENSGALE00000191445	chr1:185053064-185055405	2342	VMO1_CHICK	89-183	95	2	A:69-163 B:69-163	95 95

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:163
 aligned with VMO1_CHICK | P41366 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:163
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180   
           VMO1_CHICK    21 RTREYTSVITVPNGGHWGKWGIRQFCHSGYANGFALKVEPSQFGRDDTALNGIRLRCLDGSVIESLVGKWGTWTSFLVCPTGYLVSFSLRSEKSQGGGDDTAANNIQFRCSDEAVLVGDGLSWGRFGPWSKRCKICGLQTKVESPQGLRDDTALNNVRFFCCK 183
               SCOP domains d1vmoa_ A: Vitelline membrane outer protein-I (VMO-I)                                                                                                               SCOP domains
               CATH domains 1vmoA00 A:1-163  [code=2.100.10.20, no name defined]                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee.........eee..eee.....eeeeeee.............eeeeee...eee........eee..eee.....eeeeeee.............eeeeee...eee........eee........eeeeeee.............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: A:1-37 UniProt: 1-57  Exon 1.2  PDB: A:38-69          ---------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------Exon 1.3  PDB: A:69-163 UniProt: 89-183                                                         Transcript 1 (2)
                 1vmo A   1 RTREYTSVITVPNGGHWGKWGIRQFCHSGYANGFALKVEPSQFGRDDTALNGIRLRCLDGSVIESLVGKWGTWTSFLVCPTGYLVSFSLRSEKSQGGGDDTAANNIQFRCSDEAVLVGDGLSWGRFGPWSKRCKICGLQTKVESPQGLRDDTALNNVRFFCCK 163
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain B from PDB  Type:PROTEIN  Length:163
 aligned with VMO1_CHICK | P41366 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:163
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180   
           VMO1_CHICK    21 RTREYTSVITVPNGGHWGKWGIRQFCHSGYANGFALKVEPSQFGRDDTALNGIRLRCLDGSVIESLVGKWGTWTSFLVCPTGYLVSFSLRSEKSQGGGDDTAANNIQFRCSDEAVLVGDGLSWGRFGPWSKRCKICGLQTKVESPQGLRDDTALNNVRFFCCK 183
               SCOP domains d1vmob_ B: Vitelline membrane outer protein-I (VMO-I)                                                                                                               SCOP domains
               CATH domains 1vmoB00 B:1-163  [code=2.100.10.20, no name defined]                                                                                                                CATH domains
           Pfam domains (1) -------VOMI-1vmoB01 B:8-162                                                                                                                                       - Pfam domains (1)
           Pfam domains (2) -------VOMI-1vmoB02 B:8-162                                                                                                                                       - Pfam domains (2)
         Sec.struct. author ......eee.........eee..eee.....eeeeeee.............eeeeee...eee........eee..eee.....eeeeeee.............eeeeee...eee........eee........eeeeeee.............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:1-37 UniProt: 1-57  Exon 1.2  PDB: B:38-69          ---------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------Exon 1.3  PDB: B:69-163 UniProt: 89-183                                                         Transcript 1 (2)
                 1vmo B   1 RTREYTSVITVPNGGHWGKWGIRQFCHSGYANGFALKVEPSQFGRDDTALNGIRLRCLDGSVIESLVGKWGTWTSFLVCPTGYLVSFSLRSEKSQGGGDDTAANNIQFRCSDEAVLVGDGLSWGRFGPWSKRCKICGLQTKVESPQGLRDDTALNNVRFFCCK 163
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: All beta proteins (24004)

Fold: beta-Prism I (50)

Superfamily: Vitelline membrane outer protein-I (VMO-I) (1)

Family: Vitelline membrane outer protein-I (VMO-I) (1)

Protein domain: Vitelline membrane outer protein-I (VMO-I) (1)

Chicken (Gallus gallus) [TaxId: 9031] (1)

1a	d1vmoa_	A:
1b	d1vmob_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Aligned Prism (39)

Topology: Vitelline Membrane Outer Layer Protein I, subunit A (39)

Homologous Superfamily: [code=2.100.10.20, no name defined] (1)

Chicken (Gallus gallus) (1)

1a	1vmoA00	A:1-163
1b	1vmoB00	B:1-163

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: VOMI] (1)

Family: VOMI (1)

Gallus gallus (Chicken) (1)

1a	VOMI-1vmoB01	B:8-162
1b	VOMI-1vmoB02	B:8-162

Asymmetric Unit(hide GO term definitions)

Chain A,B (VMO1_CHICK | P41366)

cellular component
	GO:0070062		extracellular exosome		A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576		extracellular region		The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
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Biological Units
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		Biological Unit 2	[ Jena3D ]

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	1vmo
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Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (8, 8)

Cis Peptide Bonds (0, 0)

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Exons (3, 6)

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