1VL5 - JenaLib

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Title :   CRYSTAL STRUCTURE OF A PUTATIVE METHYLTRANSFERASE (BH2331) FROM BACILLUS HALODURANS C-125 AT 1.95 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   09 Jul 04 (Deposition) - 17 Aug 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Putative Methyltransferase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Bh2331) From Bacillus Halodurans At 1. 95 A Resolution
To Be Published
PubMed: search

Molecule 1 - UNKNOWN CONSERVED PROTEIN BH2331
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BH2331
	Organism Scientific	:	BACILLUS HALODURANS
	Organism Taxid	:	272558
	Strain	:	C-125

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 20)

No.	Name	Count	Type	Full Name
1	MSE	20	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 5)

No.	Name	Count	Type	Full Name
1	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 5)

No.	Name	Count	Type	Full Name
1	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 5)

No.	Name	Count	Type	Full Name
1	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (1, 5)

No.	Name	Count	Type	Full Name
1	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1VL5)

(no "SS Bond" information available for 1VL5)

(no "Cis Peptide Bond" information available for 1VL5)

(no "SAP(SNP)/Variant" information available for 1VL5)

(no "PROSITE Motif" information available for 1VL5)

(no "Exon" information available for 1VL5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:231
 aligned with Q9KAF6_BACHD | Q9KAF6 from UniProtKB/TrEMBL  Length:265

    Alignment length:231
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257 
         Q9KAF6_BACHD    28 GSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQLPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDRMNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILMKARKPT 258
               SCOP domains d1vl5a_ A: Hypothetical protein BH2331                                                                                                                                                                                                  SCOP domains
               CATH domains 1vl5A00 A:28-258 Vaccinia Virus protein VP39                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh.....eeeee....hhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhh....eeeee............eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeee...hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeeeeeeeeehhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhh..eee..eeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vl5 A  28 GSDLAKLmQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQmPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKmLEEAGFELEELHCFHKTFIFEDWCDRmNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILmKARKPT 258
                                   |37        47        57        67        77        87        97    |  107       117       127       137       147       157       167       177   |   187       197       207|      217       227       237       247    |  257 
                                  35-MSE                                                            102-MSE                                                                        181-MSE                    208-MSE                                     252-MSE

Chain B from PDB  Type:PROTEIN  Length:231
 aligned with Q9KAF6_BACHD | Q9KAF6 from UniProtKB/TrEMBL  Length:265

    Alignment length:231
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257 
         Q9KAF6_BACHD    28 GSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQLPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDRMNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILMKARKPT 258
               SCOP domains d1vl5b_ B: Hypothetical protein BH2331                                                                                                                                                                                                  SCOP domains
               CATH domains 1vl5B00 B:28-258 Vaccinia Virus protein VP39                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh.....eeeee....hhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhh....eeeee............eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeee...hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeeeeeeeeehhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhh.eee..eeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vl5 B  28 GSDLAKLmQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQmPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKmLEEAGFELEELHCFHKTFIFEDWCDRmNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILmKARKPT 258
                                   |37        47        57        67        77        87        97    |  107       117       127       137       147       157       167       177   |   187       197       207|      217       227       237       247    |  257 
                                  35-MSE                                                            102-MSE                                                                        181-MSE                    208-MSE                                     252-MSE

Chain C from PDB  Type:PROTEIN  Length:213
 aligned with Q9KAF6_BACHD | Q9KAF6 from UniProtKB/TrEMBL  Length:265

    Alignment length:231
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257 
         Q9KAF6_BACHD    28 GSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQLPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDRMNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILMKARKPT 258
               SCOP domains d1vl5c_ C: Hypothetical protein BH2331                                                                                                                                                                                                  SCOP domains
               CATH domains 1vl5C00 C:28-258 Vaccinia Virus protein VP39                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh.....eeeeee.....hhhhhhhhh.eeeeee.------------------..eeee............eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeee...hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeeeeeeeeehhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhh.eee..eeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vl5 C  28 GSDLAKLmQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDL------------------QVEYVQGDAEQmPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKmLEEAGFELEELHCFHKTFIFEDWCDRmNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILmKARKPT 258
                                   |37        47        57        67    |    -         -   |    97    |  107       117       127       137       147       157       167       177   |   187       197       207|      217       227       237       247    |  257 
                                  35-MSE                               72                 91        102-MSE                                                                        181-MSE                    208-MSE                                     252-MSE

Chain D from PDB  Type:PROTEIN  Length:231
 aligned with Q9KAF6_BACHD | Q9KAF6 from UniProtKB/TrEMBL  Length:265

    Alignment length:231
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257 
         Q9KAF6_BACHD    28 GSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQLPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDRMNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILMKARKPT 258
               SCOP domains d1vl5d_ D: Hypothetical protein BH2331                                                                                                                                                                                                  SCOP domains
               CATH domains 1vl5D00 D:28-258 Vaccinia Virus protein VP39                                                                                                                                                                                            CATH domains
           Pfam domains (1) -------------------Methyltransf_11-1vl5D01 D:47-143                                                                 ------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------Methyltransf_11-1vl5D02 D:47-143                                                                 ------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------Methyltransf_11-1vl5D03 D:47-143                                                                 ------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -------------------Methyltransf_11-1vl5D04 D:47-143                                                                 ------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) Ubie_methyltran-1vl5D05 D:28-165                                                                                                          --------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) Ubie_methyltran-1vl5D06 D:28-165                                                                                                          --------------------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) Ubie_methyltran-1vl5D07 D:28-165                                                                                                          --------------------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) Ubie_methyltran-1vl5D08 D:28-165                                                                                                          --------------------------------------------------------------------------------------------- Pfam domains (8)
         Sec.struct. author ..hhhhhhhhhh.....eeeee....hhhhhhhh....eeeeee.hhhhhhhhhhhhhhh.....eeee............eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeee...hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeeeeeeeeehhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhh.eee..eeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vl5 D  28 GSDLAKLmQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQmPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKmLEEAGFELEELHCFHKTFIFEDWCDRmNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILmKARKPT 258
                                   |37        47        57        67        77        87        97    |  107       117       127       137       147       157       167       177   |   187       197       207|      217       227       237       247    |  257 
                                  35-MSE                                                            102-MSE                                                                        181-MSE                    208-MSE                                     252-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: S-adenosyl-L-methionine-dependent methyltransferases (533)

Superfamily: S-adenosyl-L-methionine-dependent methyltransferases (533)

Family: UbiE/COQ5-like (7)

Protein domain: Hypothetical protein BH2331 (1)

Bacillus halodurans [TaxId: 86665] (1)

1a	d1vl5a_	A:
1b	d1vl5b_	B:
1c	d1vl5c_	C:
1d	d1vl5d_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Vaccinia Virus protein VP39 (378)

Bacillus halodurans c-125. Organism_taxid: 272558. Strain: c-125. (1)

1a	1vl5A00	A:28-258
1b	1vl5B00	B:28-258
1c	1vl5D00	D:28-258
1d	1vl5C00	C:28-258

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: Methyltransf_11 (8)

Bacillus halodurans (1)

1a	Methyltransf_11-1vl5D01	D:47-143
1b	Methyltransf_11-1vl5D02	D:47-143
1c	Methyltransf_11-1vl5D03	D:47-143
1d	Methyltransf_11-1vl5D04	D:47-143

Family: Ubie_methyltran (1)

Bacillus halodurans (1)

2a	Ubie_methyltran-1vl5D05	D:28-165
2b	Ubie_methyltran-1vl5D06	D:28-165
2c	Ubie_methyltran-1vl5D07	D:28-165
2d	Ubie_methyltran-1vl5D08	D:28-165

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q9KAF6_BACHD | Q9KAF6)

molecular function
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.

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