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(-) Description

Title :  CRYSTAL STRUCTURE OF A PREDICTED GLYCOSIDASE (TM1225) FROM THERMOTOGA MARITIMA MSB8 AT 2.10 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  12 May 04  (Deposition) - 25 May 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x)
Biol. Unit 5:  B (1x),D (1x),F (1x)
Biol. Unit 6:  A (1x),C (1x),E (1x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Tm1225) From Thermotoga Maritima At 2. 10 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN TM1225
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM1225
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: MSB8

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF
Biological Unit 4 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)
Biological Unit 5 (1x):  B (1x) D (1x) F (1x)
Biological Unit 6 (1x): A (1x) C (1x) E (1x) 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 31)

Asymmetric Unit (2, 31)
No.NameCountTypeFull Name
1MSE29Mod. Amino AcidSELENOMETHIONINE
2TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (2, 11)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (2, 11)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 3 (1, 9)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 4 (2, 11)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 5 (2, 6)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 6 (2, 6)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:238 , HOH A:367 , ASN C:238 , HOH C:338 , ASN E:238 , HOH E:333BINDING SITE FOR RESIDUE TRS A 327
2AC2SOFTWAREASN B:238 , HOH B:332 , ASN D:238 , PRO D:279 , HOH D:331 , ASN F:238 , HOH F:328BINDING SITE FOR RESIDUE TRS D 327

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VKD)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Asn A:30 -Pro A:31
2Pro A:149 -Phe A:150
3Asn B:30 -Pro B:31
4Pro B:149 -Phe B:150
5Asn C:30 -Pro C:31
6Pro C:149 -Phe C:150
7Asn D:30 -Pro D:31
8Pro D:149 -Phe D:150
9Asn E:30 -Pro E:31
10Pro E:149 -Phe E:150
11Asn F:30 -Pro F:31
12Pro F:149 -Phe F:150

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VKD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VKD)

(-) Exons   (0, 0)

(no "Exon" information available for 1VKD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:327
 aligned with Q9X0V2_THEMA | Q9X0V2 from UniProtKB/TrEMBL  Length:326

    Alignment length:327
                             1                                                                                                                                                                                                                                                                                                                                         
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       
         Q9X0V2_THEMA     - -MKVFTEKIPNIPWEERPEGYTGPVWRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFCTDDHGPTIGVGMTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVMLNRPSDNGHTPFGDIFLSESPDMIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAFGYIDEIVDFVKRNSM 326
               SCOP domains d1vkda_ A: Hypothetical protein TM1225                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................eee..............eeeeeeeeeeee..eeeeeeeeee....eeeeeeee......ee......ee...........eeeeeeeee..eeeeeeeee...eeeeeeee.....eeee.......eeeeee........eeeeeee..........eeeeee......eeeeeee.....hhhhh.eeee....eee..eeeeeeeeeeee..eeeeeeeeeee.......eeee.........hhhhhh......eeeeeeee.....eeeeeeee...eeeeeeeehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkd A   0 HmKVFTEKIPNIPWEERPEGYTGPVWRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFCTDDHGPTIGVGmTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVmLNRPSDNGHTPFGDIFLSESPDmIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAFGYIDEIVDFVKRNSm 326
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129   |   139       149       159       169       179       189|      199       209       219       229       239       249       259       269       279       289       299       309       319      |
                             |                                                                                                                                 133-MSE                           167-MSE                190-MSE                                                                                                                                 326-MSE
                             1-MSE                                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:326
 aligned with Q9X0V2_THEMA | Q9X0V2 from UniProtKB/TrEMBL  Length:326

    Alignment length:326
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      
         Q9X0V2_THEMA     1 MKVFTEKIPNIPWEERPEGYTGPVWRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFCTDDHGPTIGVGMTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVMLNRPSDNGHTPFGDIFLSESPDMIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAFGYIDEIVDFVKRNSM 326
               SCOP domains d1vkdb_ B: Hypothetical protein TM1225                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eee..............eeeeeeeeeeee..eeeeeeeeee....eeeeeeee......ee......ee...........eeeeeeeee..eeeeeeeee...eeeeeeee.....eeee.......eeeeee........eeeeeee..........eeeeee......eeeeeee.....hhhhh.eeee....eee..eeeeeeeeeeee..eeeeeeeeeee.......eeee.........hhhhhh......eeeeeeee.....eeeeeeee...eeeeeeeehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkd B   1 mKVFTEKIPNIPWEERPEGYTGPVWRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFCTDDHGPTIGVGmTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVmLNRPSDNGHTPFGDIFLSESPDmIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAFGYIDEIVDFVKRNSm 326
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160      |170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     |
                            |                                                                                                                                 133-MSE                           167-MSE                190-MSE                                                                                                                                 326-MSE
                            1-MSE                                                                                                                                                                                                                                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:326
 aligned with Q9X0V2_THEMA | Q9X0V2 from UniProtKB/TrEMBL  Length:326

    Alignment length:326
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      
         Q9X0V2_THEMA     1 MKVFTEKIPNIPWEERPEGYTGPVWRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFCTDDHGPTIGVGMTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVMLNRPSDNGHTPFGDIFLSESPDMIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAFGYIDEIVDFVKRNSM 326
               SCOP domains d1vkdc_ C: Hypothetical protein TM1225                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eee..............eeeeeeeeeeee..eeeeeeeeee....eeeeeeee......ee......ee...........eeeeeeeee..eeeeeeeee...eeeeeeee.....eeee.......eeeeee........eeeeeee..........eeeeee......eeeeeee.....hhhhh.eeee....eee..eeeeeeeeeeee..eeeeeeeeeee.......eeee.........hhhhhh......eeeeeeee.....eeeeeeee...eeeeeeeehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkd C   1 mKVFTEKIPNIPWEERPEGYTGPVWRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFCTDDHGPTIGVGmTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVmLNRPSDNGHTPFGDIFLSESPDmIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAFGYIDEIVDFVKRNSm 326
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160      |170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     |
                            |                                                                                                                                 133-MSE                           167-MSE                190-MSE                                                                                                                                 326-MSE
                            1-MSE                                                                                                                                                                                                                                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:326
 aligned with Q9X0V2_THEMA | Q9X0V2 from UniProtKB/TrEMBL  Length:326

    Alignment length:326
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      
         Q9X0V2_THEMA     1 MKVFTEKIPNIPWEERPEGYTGPVWRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFCTDDHGPTIGVGMTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVMLNRPSDNGHTPFGDIFLSESPDMIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAFGYIDEIVDFVKRNSM 326
               SCOP domains d1vkdd_ D: Hypothetical protein TM1225                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eee..............eeeeeeeeeeee..eeeeeeeeee....eeeeeeee......ee......ee...........eeeeeeeee..eeeeeeeee...eeeeeeee.....eeee.......eeeeee........eeeeeee..........eeeeee......eeeeeee.....hhhhh.eeee....eee..eeeeeeeeeeee..eeeeeeeeeee.......eeee.........hhhhhh......eeeeeeee.....eeeeeeee...eeeeeeeehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkd D   1 mKVFTEKIPNIPWEERPEGYTGPVWRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFCTDDHGPTIGVGmTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVmLNRPSDNGHTPFGDIFLSESPDmIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAFGYIDEIVDFVKRNSm 326
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160      |170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     |
                            |                                                                                                                                 133-MSE                           167-MSE                190-MSE                                                                                                                                 326-MSE
                            1-MSE                                                                                                                                                                                                                                                                                                                                 


Chain E from PDB  Type:PROTEIN  Length:325
 aligned with Q9X0V2_THEMA | Q9X0V2 from UniProtKB/TrEMBL  Length:326

    Alignment length:325
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     
         Q9X0V2_THEMA     1 MKVFTEKIPNIPWEERPEGYTGPVWRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFCTDDHGPTIGVGMTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVMLNRPSDNGHTPFGDIFLSESPDMIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAFGYIDEIVDFVKRNS 325
               SCOP domains d1vkde_ E: Hypothetical protein TM1225                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eee..............eeeeeeeeeeee..eeeeeeeeee....eeeeeeee......ee......ee...........eeeeeeeee..eeeeeeeee...eeeeeeee.....eeee.......eeeeee........eeeeeee..........eeeeee......eeeeeee.....hhhhh.eeee....eee..eeeeeeeeeeee..eeeeeeeeeee.......eeee.........hhhhhh......eeeeeeee.....eeeeeeee...eeeeeeeehhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkd E   1 mKVFTEKIPNIPWEERPEGYTGPVWRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFCTDDHGPTIGVGmTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVmLNRPSDNGHTPFGDIFLSESPDmIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAFGYIDEIVDFVKRNS 325
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160      |170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     
                            |                                                                                                                                 133-MSE                           167-MSE                190-MSE                                                                                                                                   
                            1-MSE                                                                                                                                                                                                                                                                                                                                


Chain F from PDB  Type:PROTEIN  Length:326
 aligned with Q9X0V2_THEMA | Q9X0V2 from UniProtKB/TrEMBL  Length:326

    Alignment length:326
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      
         Q9X0V2_THEMA     1 MKVFTEKIPNIPWEERPEGYTGPVWRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFCTDDHGPTIGVGMTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVMLNRPSDNGHTPFGDIFLSESPDMIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAFGYIDEIVDFVKRNSM 326
               SCOP domains d1vkdf_ F: Hypothetical protein TM1225                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---DUF377-1vkdF01 F:4-323                                                                                                                                                                                                                                                                                                          --- Pfam domains (1)
           Pfam domains (2) ---DUF377-1vkdF02 F:4-323                                                                                                                                                                                                                                                                                                          --- Pfam domains (2)
           Pfam domains (3) ---DUF377-1vkdF03 F:4-323                                                                                                                                                                                                                                                                                                          --- Pfam domains (3)
           Pfam domains (4) ---DUF377-1vkdF04 F:4-323                                                                                                                                                                                                                                                                                                          --- Pfam domains (4)
           Pfam domains (5) ---DUF377-1vkdF05 F:4-323                                                                                                                                                                                                                                                                                                          --- Pfam domains (5)
           Pfam domains (6) ---DUF377-1vkdF06 F:4-323                                                                                                                                                                                                                                                                                                          --- Pfam domains (6)
         Sec.struct. author .......................eee..............eeeeeeeeeeee..eeeeeeeeee....eeeeeeee......ee......ee...........eeeeeeeee..eeeeeeeee...eeeeeeee.....eeee.......eeeeee........eeeeeee..........eeeeee......eeeeeee.....hhhhh.eeee....eee..eeeeeeeeeeee..eeeeeeeeeee.......eeee.........hhhhhh......eeeeeeee.....eeeeeeee...eeeeeeeehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkd F   1 mKVFTEKIPNIPWEERPEGYTGPVWRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFCTDDHGPTIGVGmTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVmLNRPSDNGHTPFGDIFLSESPDmIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAFGYIDEIVDFVKRNSm 326
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160      |170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     |
                            1-MSE                                                                                                                             133-MSE                           167-MSE                190-MSE                                                                                                                                 326-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1VKD)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: B_Fructosidase (34)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q9X0V2_THEMA | Q9X0V2)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

 Visualization

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Asymmetric Unit
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