1VKC - JenaLib

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Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   PUTATIVE ACETYL TRANSFERASE FROM PYROCOCCUS FURIOSUS

Authors :   J. E. Habel, Z. -J. Liu, W. Tempel, J. P. Rose, P. S. Brereton, M. Izumi, F. Jr, F. L. Poole Ii, C. Shah, F. J. Sugar, M. W. W. Adams, D. C. Richardson J. S. Richardson, B. -C. Wang, Southeast Collaboratory For Struct Genomics (Secsg)

Date :   11 May 04 (Deposition) - 14 Dec 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.89

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A (1x),B (1x)
Biol. Unit 3: A  (1x)
Biol. Unit 4: B  (1x)

Keywords :   Structural Genomics, Acetyl Transferase, Pyrococcus Furiosus, Southeast Collaboratory For Structural Genomics, Secsg, Protein Structure Initiative, Psi, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. E. Habel, Z. -J. Liu, W. Tempel, J. P. Rose, P. S. Brereton, M. Izumi, F. E. Jenney Jr, F. L. Poole Ii, C. Shah, F. J. Sugar, M. W. W. Adams, D. C. Richardson, J. S. Richardson, B. -C. Wang, Southeast Collaboratory For Structural Genomics
Putative Acetyl Transferase From Pyrococcus Furiosus
To Be Published
PubMed: search

Molecule 1 - PUTATIVE ACETYL TRANSFERASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	PYROCOCCUS FURIOSUS
	Organism Taxid	:	2261
	Other Details	:	THE PROTEIN WAS CLONED, EXPRESSED AND PURIFIED BY THE SECSG PYROCOCCUS PROTEIN PRODUCTION GROUP (M.W.W.ADAMS, P.S.BRERETON, M.IZUMI, F.E.JENNEY JR., H.- S.LEE, F.L. POOLE II, C.SHAH, F.SUGAR) UNDER THE DIRECTION OF M.W.W.ADAMS.

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:	A (1x)	B (1x)
Biological Unit 3 (1x)	:	A
Biological Unit 4 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 13)

No.	Name	Count	Type	Full Name
1	IOD	13	Ligand/Ion	IODIDE ION

Biological Unit 1 (1, 13)

No.	Name	Count	Type	Full Name
1	IOD	13	Ligand/Ion	IODIDE ION

Biological Unit 2 (1, 8)

No.	Name	Count	Type	Full Name
1	IOD	8	Ligand/Ion	IODIDE ION

Biological Unit 3 (1, 8)

No.	Name	Count	Type	Full Name
1	IOD	8	Ligand/Ion	IODIDE ION

Biological Unit 4 (1, 5)

No.	Name	Count	Type	Full Name
1	IOD	5	Ligand/Ion	IODIDE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:24 , LYS B:93	BINDING SITE FOR RESIDUE IOD A 201
02	AC2	SOFTWARE	LYS A:93 , TYR B:24	BINDING SITE FOR RESIDUE IOD A 202
03	AC3	SOFTWARE	LEU B:65	BINDING SITE FOR RESIDUE IOD B 203
04	AC4	SOFTWARE	GLU A:14 , LEU A:65	BINDING SITE FOR RESIDUE IOD A 204
05	AC5	SOFTWARE	TYR B:85	BINDING SITE FOR RESIDUE IOD B 205
06	AC6	SOFTWARE	ARG B:20	BINDING SITE FOR RESIDUE IOD B 206
07	AC7	SOFTWARE	TYR A:85	BINDING SITE FOR RESIDUE IOD A 207
08	AC8	SOFTWARE	LYS A:82	BINDING SITE FOR RESIDUE IOD A 208
09	AC9	SOFTWARE	VAL A:91	BINDING SITE FOR RESIDUE IOD A 209
10	BC1	SOFTWARE	LYS B:119	BINDING SITE FOR RESIDUE IOD A 212
11	BC2	SOFTWARE	LYS A:119 , HOH B:342	BINDING SITE FOR RESIDUE IOD A 213

(no "SS Bond" information available for 1VKC)

(no "Cis Peptide Bond" information available for 1VKC)

(no "SAP(SNP)/Variant" information available for 1VKC)

(no "PROSITE Motif" information available for 1VKC)

(no "Exon" information available for 1VKC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:149
 aligned with Q8U4Q2_PYRFU | Q8U4Q2 from UniProtKB/TrEMBL  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
         Q8U4Q2_PYRFU     2 EYTIVDGEEYIEEIKKLDREISYSFVRFPISYEEYEERHEELFESLLSQGEHKFFVALNERSELLGHVWICITLDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVEIDNPAVKWYEERGYKARALIMEKPI 150
               SCOP domains d1vkca_ A: Putative acetyltransferase PF0028                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.eeeeeeeee....eeeeeeeeeee......eeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh....eee......hhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkc A   2 EYTIVDGEEYIEEIKKLDREISYSFVRFPISYEEYEERHEELFESLLSQGEHKFFVALNERSELLGHVWICITLDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVEIDNPAVKWYEERGYKARALIMEKPI 150
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141

Chain B from PDB  Type:PROTEIN  Length:149
 aligned with Q8U4Q2_PYRFU | Q8U4Q2 from UniProtKB/TrEMBL  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
         Q8U4Q2_PYRFU     2 EYTIVDGEEYIEEIKKLDREISYSFVRFPISYEEYEERHEELFESLLSQGEHKFFVALNERSELLGHVWICITLDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVEIDNPAVKWYEERGYKARALIMEKPI 150
               SCOP domains d1vkcb_ B: Putative acetyltransferase PF0028                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------Acetyltransf_1-1vkcB01 B:37-140                                                                         ---------- Pfam domains (1)
           Pfam domains (2) -----------------------------------Acetyltransf_1-1vkcB02 B:37-140                                                                         ---------- Pfam domains (2)
         Sec.struct. author ..eeee...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.eeeeeeee.....eeeeeeeeeee......eeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh....eee......hhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkc B   2 EYTIVDGEEYIEEIKKLDREISYSFVRFPISYEEYEERHEELFESLLSQGEHKFFVALNERSELLGHVWICITLDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVEIDNPAVKWYEERGYKARALIMEKPI 150
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Acyl-CoA N-acyltransferases (Nat) (250)

Superfamily: Acyl-CoA N-acyltransferases (Nat) (250)

Family: N-acetyl transferase, NAT (154)

Protein domain: Putative acetyltransferase PF0028 (1)

Pyrococcus furiosus [TaxId: 2261] (1)

1a	d1vkca_	A:
1b	d1vkcb_	B:

(no "CATH Domain" information available for 1VKC)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Acetyltrans (109)

Family: Acetyltransf_1 (58)

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (1)

1a	Acetyltransf_1-1vkcB01	B:37-140
1b	Acetyltransf_1-1vkcB02	B:37-140

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q8U4Q2_PYRFU | Q8U4Q2)

molecular function
	GO:0008080		N-acetyltransferase activity		Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
	GO:0016740		transferase activity		Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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Description

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Chains, Units

Ligands, Modified Residues, Ions (1, 13)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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