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(-) Description

Title :  CRYSTAL STRUCTURE OF PFKB CARBOHYDRATE KINASE (TM0415) FROM THERMOTOGA MARITIMA AT 1.91 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  26 Apr 04  (Deposition) - 04 May 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym./Biol. Unit :  A
Keywords :  Tm0415, Pfkb Carbohydrate Kinase, Structural Genomics, Jcsg, Psi, Protein Structure Initiative, Joint Center For Structural Genomics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Pfkb Carbohydrate Kinase (Tm0415) From Thermotoga Maritima At 1. 91 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PFKB CARBOHYDRATE KINASE TM0415
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM0415
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1VK4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VK4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VK4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VK4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VK4)

(-) Exons   (0, 0)

(no "Exon" information available for 1VK4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:283
 aligned with Q9WYP6_THEMA | Q9WYP6 from UniProtKB/TrEMBL  Length:286

    Alignment length:288
                                   1                                                                                                                                                                                                                                                                                        
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273        
         Q9WYP6_THEMA     - -------MITFIGHVSKDVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKFSFLRDNGVEVVFLKSPRTTSIENRYGSDPDTRESFLISAADPFTESDLAFIEGEAVHINPLWYGEFPEDLIPVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRESCRIIRSFGAKIILATHASGVIVFDGNFYEASFRSWSLEGRTGRGDTCTAAFLVGFVFKKMSIEKATKFAAAVTSVKMRHPGPLRREDLEAIS 281
               SCOP domains d1vk4a_ A: Hypothetical protein TM0415                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1vk4A00 A:-6-281  [code=3.40.1190.20, no name defined]                                                                                                                                                                                                                                           CATH domains
               Pfam domains -------PfkB-1vk4A01 A:1-276                                                                                                                                                                                                                                                                ----- Pfam domains
         Sec.struct. author .......eeeee...eeeeeee..eeeeeeehhhhhhhhhhhhh..eeeeeeee...hhhhhh.hhhhh.eeeeee....eeeeee.-----..eeeeee.....hhhhhhhh...eeee........hhhhhhhhhhhh.eeeeehhhhheeee..eeee....hhhhhhhhh.eeeeehhhhhhhhh..hhhhhhhhhhhh....eeeee..eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh......hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1vk4 A  -6 IHHHHHHmITFIGHVSKDVNVVDGKREIAYGGGVVmGAITSSLLGVKTKVITKCTREDVSKFSFLRDNGVEVVFLKSPRTTSIENRY-----TRESFLISAADPFTESDLAFIEGEAVHINPLWYGEFPEDLIPVLRRKVmFLSADAQGFVRVPENEKLVYRDWEmKEKYLKYLDLFKVDSREAETLTGTNDLRESCRIIRSFGAKIILATHASGVIVFDGNFYEASFRSWSLEGRTGRGDTCTAAFLVGFVFKKmSIEKATKFAAAVTSVKmRHPGPLRREDLEAIS 281
                                   | 3        13        23     |  33        43        53        63        73      |  -  |     93       103       113       123       133|      143       153     | 163       173       183       193       203       213       223       233       243     | 253       263  |    273        
                                   1-MSE                      29-MSE                                             80    86                                             134-MSE                  159-MSE                                                                                   249-MSE          266-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Ribokinase (55)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9WYP6_THEMA | Q9WYP6)
molecular function
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

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