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Asym./Biol. Unit (Jmol Viewer)

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Title :   CONSERVED HYPOTHETICAL PROTEIN FROM PYROCOCCUS FURIOSUS PFU-392566-001

Authors :   A. Shah, Z. J. Liu, W. Tempel, L. Chen, D. Lee, H. Yang, J. Chang, M. Zhao, J J. Rose, P. S. Brereton, M. Izumi, F. E. Jenney Jr. , F. L. Poole Ii, C. S F. J. Sugar, M. W. W. Adams, D. C. Richardson, J. S. Richardson, B. C. Wan Southeast Collaboratory For Structural Genomics (Secsg)

Date :   13 Apr 04 (Deposition) - 10 Aug 04 (Release) - 09 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.20

Chains :   Asym./Biol. Unit : A

Keywords :   Reductive Methylation, Dimethyl Lysine, Pyrococcus Furiosus, Conserved Hypothetical Protein, Structural Genomics, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Shaw, C. Cheng, W. Tempel, J. Chang, J. Ng, X. Y. Wang, S. Perrett, J. Rose, Z. Rao, B. C. Wang, Z. J. Liu
(Nz)Ch. . . O Contacts Assist Crystallization Of A Parb-Like Nuclease.
Bmc Struct. Biol. V. 7 46 2007
PubMed-ID: 17617922 | Reference-DOI: 10.1186/1472-6807-7-46
(for further references see the PDB file header)

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	PYROCOCCUS FURIOSUS
	Organism Taxid	:	2261

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 12)

No.	Name	Count	Type	Full Name
1	MLY	9	Mod. Amino Acid	N-DIMETHYL-LYSINE
2	NA	1	Ligand/Ion	SODIUM ION
3	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:30 , GLY A:70 , HIS A:71 , HIS A:72 , MLY A:221 , HOH A:307 , HOH A:319 , HOH A:331 , HOH A:348 , HOH A:396	BINDING SITE FOR RESIDUE PO4 A 301
2	AC2	SOFTWARE	GLU A:30 , THR A:223 , HOH A:331 , HOH A:396	BINDING SITE FOR RESIDUE NA A 302
3	AC3	SOFTWARE	GLN A:158 , ARG A:200 , MLY A:201 , PRO A:203 , GLU A:207 , HOH A:434 , HOH A:435	BINDING SITE FOR RESIDUE PEG A 303

(no "SS Bond" information available for 1VK1)

(no "Cis Peptide Bond" information available for 1VK1)

(no "SAP(SNP)/Variant" information available for 1VK1)

(no "PROSITE Motif" information available for 1VK1)

(no "Exon" information available for 1VK1)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:232
 aligned with Q8U3S5_PYRFU | Q8U3S5 from UniProtKB/TrEMBL  Length:242

    Alignment length:232
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
         Q8U3S5_PYRFU    11 IPVKKVEYVFIELDKMKPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVYTWYPAFKGDVNKVIERLKAEGLEVIEDEKAEEKAEKGEIAFALIGEKSFAIPGGLEEQKKVSKVLDEMDQAKEIELVYYGLKEDAKADMEKGEIDYVFIRKAPTKEEVMELVKRGEVFSPKTTRHVLPFIPDKIDVKLEDLF 242
               SCOP domains d1vk1a_ A: Hypothetical protein PF0380                                                                                                                                                                                                   SCOP domains
               CATH domains 1vk1A01 A:11-96,A:227-242                                                             1vk1A02 A:97-226 Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2                                1vk1A01          CATH domains
               Pfam domains --------ParBc-1vk1A01 A:19-114                                                                          -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....eeee...ee.....hhhhhhhhhhhhhhhhee...eeeee......eeeeehhhhhhhhhhhh..eeeeeee.......eee..eeeee.hhhhhhhhhhhh....ee..hhhhhhhh....eeee...eeee..hhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhh....eeee....hhhhhhhhhhh.........eee...ee....ee.hhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vk1 A  11 IPVKKVEYVFIELDKMkPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVYTWYPAFkGDVNkVIERLKAEGLEVIEDEKAEEkAEkGEIAFALIGEKSFAIPGGLEEQkKVSKVLDEMDQAkEIELVYYGLKEDAKADMEKGEIDYVFIRkAPTKEEVMELVKRGEVFSPkTTRHVLPFIPDKIDVKLEDLF 242
                                    20      | 30        40        50        60        70        80        90       100      |110 |     120       130  |  | 140       150       160       170 |     180       190       200|      210       220|      230       240  
                                           27-MLY                                                                         107-MLY|                  133-MLY                   159-MLY      172-MLY                      201-MLY             221-MLY                 
                                                                                                                               112-MLY                 136-MLY

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: ParB/Sulfiredoxin (11)

Superfamily: ParB/Sulfiredoxin (11)

Family: Hypothetical protein PF0380 (1)

Protein domain: Hypothetical protein PF0380 (1)

Pyrococcus furiosus [TaxId: 2261] (1)

d1vk1a_

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: ParBc (6)

Family: ParBc (6)

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (1)

ParBc-1vk1A01

A:19-114

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1VK1)

Asymmetric/Biological Unit
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 12)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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