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(-) Description

Title :  CRYSTAL STRUCTURE OF ALANINE--GLYOXYLATE AMINOTRANSFERASE (ALR1004) FROM NOSTOC SP. AT 1.70 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  16 Mar 04  (Deposition) - 23 Mar 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  17130350, Alr1004, Alanine--Glyoxylate Aminotransferase, Structural Genomics, Jcsg, Psi, Protein Structure Initiative, Joint Center For Structural Genomics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. W. Han, R. Schwarzenbacher, R. Page, L. Jaroszewski, P. Abdubek, E. Ambing, T. Biorac, J. M. Canaves, H. J. Chiu, X. Dai, A. M. Deacon, M. Didonato, M. A. Elsliger, A. Godzik, C. Grittini, S. K. Grzechnik, J. Hale, E. Hampton, J. Haugen, M. Hornsby, H. E. Klock, E. Koesema, A. Kreusch, P. Kuhn, S. A. Lesley, I. Levin, D. Mcmullan, T. M. Mcphillips, M. D. Miller, A. Morse, K. Moy, E. Nigoghossian, J. Ouyang, J. Paulsen, K. Quijano, R. Reyes, E. Sims, G. Spraggon, R. C. Stevens, H. Van Den Bedem, J. Velasquez, J. Vincent, F. Von Delft, X. Wang, B. West, A. White, G. Wolf, Q. Xu, O. Zagnitko, K. O. Hodgson, J. Wooley, I. A. Wilson
Crystal Structure Of An Alanine-Glyoxylate Aminotransferase From Anabaena Sp. At 1. 70 A Resolution Reveals A Noncovalently Linked Plp Cofactor
Proteins V. 58 971 2005
PubMed-ID: 15657930  |  Reference-DOI: 10.1002/PROT.20360

(-) Compounds

Molecule 1 - ALANINE--GLYOXYLATE AMINOTRANSFERASE
    Chains: A
    EC Number: 2.6.1.44
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: NOSTOC SP.
    Organism Taxid: 103690
    Strain: PCC 7120

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
2PLP1Ligand/IonPYRIDOXAL-5'-PHOSPHATE
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
2PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:81 , GLY A:82 , THR A:83 , PHE A:108 , ALA A:156 , THR A:158 , ASP A:183 , VAL A:185 , THR A:186 , GLN A:208 , LYS A:209 , TYR A:257 , HIS A:259 , THR A:260 , HOH A:427 , HOH A:590BINDING SITE FOR RESIDUE PLP A 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VJO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:29 -Pro A:30

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VJO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VJO)

(-) Exons   (0, 0)

(no "Exon" information available for 1VJO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:377
 aligned with Q8YY48_NOSS1 | Q8YY48 from UniProtKB/TrEMBL  Length:381

    Alignment length:377
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       
         Q8YY48_NOSS1     5 ISINDNQRLQLEPLEVPSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 381
               SCOP domains d1vjoa_ A: Alanine-glyoxylate aminotransferase                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1vjoA01 A:5-33,A:280-381     1vjoA02 A:34-279 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                  1vjoA01 A:5-33,A:280-381 Aspartate Aminotransferase, domain 1                                          CATH domains
               Pfam domains ------------------Aminotran_5-1vjoA01 A:23-372                                                                                                                                                                                                                                                                                                                                  --------- Pfam domains
         Sec.struct. author ...................ee........hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhh..eeeee.............hhhhhhhhhh.eeeee..................eee.............eeeeehhhhhhhhhh..........hhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh...eeeee.....hhhhhhhhhhhhhhee.ee.hhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vjo A   5 ISINDNQRLQLEPLEVPSRLLLGPGPSNAHPSVLQAmNVSPVGHLDPAFLALmDEIQSLLRYVWQTENPLTIAVSGTGTAAmEATIANAVEPGDVVLIGVAGYFGNRLVDmAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTmSSRAIEKLQRRRTKVANWYLDmNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLmGFNSRKESVDQLIPALEQVLR 381
                                    14        24        34      | 44        54  |     64        74        84 |      94       104       114|      124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354     | 364       374       
                                                               41-MSE          57-MSE                       86-MSE                      115-MSE                                                                                                    222-MSE               244-MSE                                                                                                             360-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: PLP_aminotran (240)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q8YY48_NOSS1 | Q8YY48)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0008483    transaminase activity    Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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