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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE ZN-DEPENDENT HYDROLASE OF THE METALLO-BETA-LACTAMASE SUPERFAMILY (TM0207) FROM THERMOTOGA MARITIMA AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  11 Mar 04  (Deposition) - 16 Mar 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Metallo-Hydrolase/Oxidoreductase Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Zn-Dependent Hydrolase Of Metallo-Beta-Lactamase Superfamily (Tm0207) From Thermotoga Maritima At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ZN-DEPENDENT HYDROLASE OF METALLO-BETA-LACTAMASE SUPERFAMILY TM0207
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM0207
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1VJN)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VJN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VJN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VJN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VJN)

(-) Exons   (0, 0)

(no "Exon" information available for 1VJN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:194
 aligned with Q9WY50_THEMA | Q9WY50 from UniProtKB/TrEMBL  Length:208

    Alignment length:209
                             1                                                                                                                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199         
         Q9WY50_THEMA     - -MKITWFGHACFALEMEGKTIVTDPFDESVGYPIPNVTADVVTESHQHFDHNAHHLVKGNFRVIDRPGAYTVNGVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKVCHLGDLGHVLTPAQVEEIGEIDVLLVPVGGTYTIGPKEAKEVADLLNAKVIIPMHYKTKYLKFNLLPVDDFLKLFDSYERVGNILELFEKPKERKVVVMEVQ 208
               SCOP domains d1vjna_ A: Hypothetical pro     tein TM0207                                                                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeee..eeeee....-----........eee.....---hhhhhh....eee...eeeee..eeeeeeeee..-------..eeeeeeee..eeeee........hhhhhhhhh...eeeee.......hhhhhhhhhhhh...eeeee.............hhhhhh.....ee...eeee.......eeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vjn A   0 HmKITWFGHACFALEmEGKTIVTDPFD-----PIPNVTADVVTESHQH---NAHHLVKGNFRVIDRPGAYTVNGVKIKGVETFHD-------GKNIVFVFEGEGIKVCHLGDLGHVLTPAQVEEIGEIDVLLVPVGGTYTIGPKEAKEVADLLNAKVIIPmHYKTKYLKFNLLPVDDFLKLFDSYERVGNILELFEKPKERKVVVmEVQ 208
                             |       9     |  19      |  -  |     39       | - |      59        69        79    |    -  |     99       109       119       129       139       149       159|      169       179       189       199     |   
                             |            15-MSE     26    32             47  51                               84      92                                                                 160-MSE                                      205-MSE
                             1-MSE                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:189
 aligned with Q9WY50_THEMA | Q9WY50 from UniProtKB/TrEMBL  Length:208

    Alignment length:208
                             1                                                                                                                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199        
         Q9WY50_THEMA     - -MKITWFGHACFALEMEGKTIVTDPFDESVGYPIPNVTADVVTESHQHFDHNAHHLVKGNFRVIDRPGAYTVNGVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKVCHLGDLGHVLTPAQVEEIGEIDVLLVPVGGTYTIGPKEAKEVADLLNAKVIIPMHYKTKYLKFNLLPVDDFLKLFDSYERVGNILELFEKPKERKVVVMEV 207
               SCOP domains d1vjnb_ B: Hypothetical pr     otein TM0207                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --Lactamase_B_3-1vjnB01 B:     2-161                                                                                                                              ---------------------------------------------- Pfam domains (1)
           Pfam domains (2) --Lactamase_B_3-1vjnB02 B:     2-161                                                                                                                              ---------------------------------------------- Pfam domains (2)
         Sec.struct. author .eeeeeee..eeeeee..eeeee...-----.........eee....----..........eee...eeeee..eeeeeee..----------..eeeeeee..eeeee........hhhhhhhhh...eeeee.......hhhhhhhhhhhh...eeeee.............hhhhhh.....ee...eeee.......eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vjn B   0 HmKITWFGHACFALEmEGKTIVTDPF-----YPIPNVTADVVTESHQ----NAHHLVKGNFRVIDRPGAYTVNGVKIKGVETF----------KNIVFVFEGEGIKVCHLGDLGHVLTPAQVEEIGEIDVLLVPVGGTYTIGPKEAKEVADLLNAKVIIPmHYKTKYLKFNLLPVDDFLKLFDSYERVGNILELFEKPKERKVVVmEV 207
                             |       9     |  19     |   - |      39      |  - |      59        69        79  |      -   |    99       109       119       129       139       149       159|      169       179       189       199     |  
                             |            15-MSE    25    31             46   51                             82         93                                                                160-MSE                                      205-MSE
                             1-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1VJN)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: Metallo-HOrase (67)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9WY50_THEMA | Q9WY50)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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