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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE DNA-BINDING PROTEIN (CC_0111) FROM CAULOBACTER CRESCENTUS CB15 AT 1.62 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  11 Feb 04  (Deposition) - 09 Mar 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.62
Chains :  Asym./Biol. Unit :  A
Keywords :  Dna Binding Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Dna-Binding Protein From Caulobacter Crescentus At 1. 62 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA-BINDING PROTEIN, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: CAULOBACTER CRESCENTUS CB15
    Organism Taxid: 190650

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:141 , ARG A:147 , HOH A:179 , HOH A:196BINDING SITE FOR RESIDUE CL A 169
2AC2SOFTWARELYS A:36 , HIS A:130 , HOH A:177 , HOH A:190 , HOH A:193 , HOH A:204 , HOH A:254 , HOH A:255BINDING SITE FOR RESIDUE GOL A 170
3AC3SOFTWARELYS A:111 , VAL A:113 , ARG A:114 , GLY A:153 , VAL A:154 , GLU A:155 , HOH A:211 , HOH A:218BINDING SITE FOR RESIDUE GOL A 171

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VJF)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:125 -Pro A:126

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VJF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VJF)

(-) Exons   (0, 0)

(no "Exon" information available for 1VJF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:168
 aligned with Q9ABV9_CAUCR | Q9ABV9 from UniProtKB/TrEMBL  Length:168

    Alignment length:168
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160        
         Q9ABV9_CAUCR     1 MKTRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGETTIDLKKLHHVIGSGRLSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVDFAAMEVVG 168
               SCOP domains d1vjfa_ A: Hypothetical protein CC0111                                                                                                                                   SCOP domains
               CATH domains -1vjfA00 A:2-168  [code=3.90.960.10, no name defined]                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhh..eeeeeeeeee....eeeeeee........hhhhhhh...eee.hhhhhhhhhh......hhhhhhhh....eeeeeehhhhh...eee......eeeeehhhhhhhhhhhh....eeee....eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1vjf A   1 mKTRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAmPGGHTKNLFLKDAKGQLWLISALGETTIDLKKLHHVIGSGRLSFGPQEmmLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPmIVDFAAmEVVG 168
                            |       10        20        30        40        50        60        70        80       |90       100       110       120       130       140       150      |160   |    
                            |                                    39-MSE                                           88-MSE                                                              157-MSE  |    
                            1-MSE                                                                                  89-MSE                                                                    164-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1VJF)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9ABV9_CAUCR | Q9ABV9)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0002161    aminoacyl-tRNA editing activity    The hydrolysis of an incorrectly aminoacylated tRNA.
biological process
    GO:0006450    regulation of translational fidelity    Any process that modulates the ability of the translational apparatus to interpret the genetic code.

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    Asp A:125 - Pro A:126   [ RasMol ]  
 

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