1VE3 - JenaLib

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Title :   CRYSTAL STRUCTURE OF PH0226 PROTEIN FROM PYROCOCCUS HORIKOSHII OT3

Authors :   N. K. Lokanath, H. Yamamoto, N. Kunishima, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   26 Mar 04 (Deposition) - 24 May 05 (Release) - 13 May 08 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (2x)
Biol. Unit 2: B  (2x)
Biol. Unit 3: A  (1x)
Biol. Unit 4: B  (1x)

Keywords :   Dimer, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Unknown Function, Nppsfa, National Project On Protein Structural And Functional Analyses (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. K. Lokanath, H. Yamamoto, N. Kunishima
Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - HYPOTHETICAL PROTEIN PH0226
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET11A
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	PYROCOCCUS HORIKOSHII
	Organism Taxid	:	53953
	Synonym	:	METHYL TRANSFERASE, SAM DEPENDENT METHYLTRANSFERASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A
Biological Unit 2 (2x)	:		B
Biological Unit 3 (1x)	:	A
Biological Unit 4 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 10)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
2	SAM	2	Ligand/Ion	S-ADENOSYLMETHIONINE

Biological Unit 1 (2, 10)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
2	SAM	2	Ligand/Ion	S-ADENOSYLMETHIONINE

Biological Unit 2 (2, 10)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
2	SAM	2	Ligand/Ion	S-ADENOSYLMETHIONINE

Biological Unit 3 (2, 5)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	SAM	1	Ligand/Ion	S-ADENOSYLMETHIONINE

Biological Unit 4 (2, 5)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	SAM	1	Ligand/Ion	S-ADENOSYLMETHIONINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:7 , TYR A:13 , GLN A:19 , TYR A:21 , ARG A:24 , ALA A:46 , GLY A:48 , ASP A:67 , ILE A:68 , SER A:69 , MSE A:72 , GLY A:92 , ASP A:93 , ALA A:94 , ILE A:110 , ASP A:111 , SER A:112 , HIS A:115 , PHE A:116 , HOH A:304 , HOH A:307 , HOH A:314 , HOH A:361	BINDING SITE FOR RESIDUE SAM A 302
2	AC2	SOFTWARE	TYR B:7 , TYR B:13 , GLN B:19 , TYR B:21 , ARG B:24 , ALA B:46 , PHE B:52 , ASP B:67 , ILE B:68 , SER B:69 , MSE B:72 , GLY B:92 , ASP B:93 , ALA B:94 , ILE B:110 , ASP B:111 , SER B:112 , HIS B:115 , PHE B:116 , HOH B:303 , HOH B:306 , HOH B:309 , HOH B:310	BINDING SITE FOR RESIDUE SAM B 301

(no "SS Bond" information available for 1VE3)

(no "Cis Peptide Bond" information available for 1VE3)

(no "SAP(SNP)/Variant" information available for 1VE3)

(no "PROSITE Motif" information available for 1VE3)

(no "Exon" information available for 1VE3)

Asymmetric Unit

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	UniProt sequence: complete aligned part

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	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:212
 aligned with O57965_PYRHO | O57965 from UniProtKB/TrEMBL  Length:227

    Alignment length:226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      
         O57965_PYRHO     2 GFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK 227
               SCOP domains d1ve3a1 A:2-227 Hypothetical protein PH0226                                                                                                                                                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eeee............eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeeeeehhhhhhhhh..---------..eeeee....eeeee.-----..eeeee..hhhhhhhhhh..eeeeeeeee...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ve3 A   2 GFKEYYRVFPTYTDINSQEYRSRIETLEPLLmKYmKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDmIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFImYFTDLRELLPRLKE---------ISKVIPDQEERTVVIEF-----SFRVRFNVWGKTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK 227
                                    11        21        31 |  |   41        51        61        71|       81        91       101       111       121       131       141       151  |      -  |    171        |-    |  191       201       211       221      
                                                          33-MSE                                 72-MSE                                                             140-MSE       154       164             180   186                                         
                                                             36-MSE

Chain B from PDB  Type:PROTEIN  Length:226
 aligned with O57965_PYRHO | O57965 from UniProtKB/TrEMBL  Length:227

    Alignment length:226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      
         O57965_PYRHO     2 GFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK 227
               SCOP domains d1ve3b_ B: Hypothetical protein PH0226                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------------Methyltransf_11-1ve3B01 B:43-140                                                                  --------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----------------------------------------Methyltransf_11-1ve3B02 B:43-140                                                                  --------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh...eeee............eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeeee.hhhhhhhhhhhhhhhhh.eeeeeeeee....eeeeeeee...eeeeeee..hhhhhhhhhhhhheeeeeeee...eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ve3 B   2 GFKEYYRVFPTYTDINSQEYRSRIETLEPLLmKYmKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDmIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFImYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK 227
                                    11        21        31 |  |   41        51        61        71|       81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      
                                                          33-MSE                                 72-MSE                                                             140-MSE                                                                                   
                                                             36-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Class: Alpha and beta proteins (a/b) (23833)

Fold: S-adenosyl-L-methionine-dependent methyltransferases (533)

Superfamily: S-adenosyl-L-methionine-dependent methyltransferases (533)

Family: CAC2371-like (3)

Protein domain: Hypothetical protein PH0226 (1)

Pyrococcus horikoshii [TaxId: 53953] (1)

1a	d1ve3a1	A:2-227
1b	d1ve3b_	B:

(no "CATH Domain" information available for 1VE3)

Asymmetric Unit(hide GO term definitions)

Chain A,B (O57965_PYRHO | O57965)


GO:0051539	4 iron, 4 sulfur cluster binding	Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.

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