1VAI - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF E. COLI CYCLOPHILIN B K163T MUTANT BOUND TO N-ACETYL-ALA-ALA-PRO-ALA-7-AMINO-4-METHYLCOUMARIN

Authors :   M. Konno, Y. Sano, K. Okudaira, Y. Kawaguchi, Y. Yamagishi-Ohmori, S. Fushinobu, H. Matsuzawa

Date :   17 Feb 04 (Deposition) - 21 Sep 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B,C  (1x)

Keywords :   Beta Barrel, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Konno, Y. Sano, K. Okudaira, Y. Kawaguchi, Y. Yamagishi-Ohmori, S. Fushinobu, H. Matsuzawa
Escherichia Coli Cyclophilin B Binds A Highly Distorted Form Of Trans-Prolyl Peptide Isomer
Eur. J. Biochem. V. 271 3794 2004
PubMed-ID: 15355356 | Reference-DOI: 10.1111/J.1432-1033.2004.04321.X
(for further references see the PDB file header)

Molecule 1 - CYCLOPHILIN B
	Chains	:	A, B
	EC Number	:	5.2.1.8
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PATRP EPPIA
	Expression System Strain	:	HB101
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	PPIASE A, ROTAMASE A, CYCLOPHILIN A

Molecule 2 - (ACE)AAPA(MCM)
	Chains	:	C
	Engineered	:	YES
	Other Details	:	CHEMICALLY SYNTHESIZED
	Synthetic	:	YES

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 2)

No.	Name	Count	Type	Full Name
1	ACE	1	Mod. Amino Acid	ACETYL GROUP
2	MCM	1	Mod. Amino Acid	7-AMINO-4-METHYL-CHROMEN-2-ONE

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	ACE	-1	Mod. Amino Acid	ACETYL GROUP
2	MCM	-1	Mod. Amino Acid	7-AMINO-4-METHYL-CHROMEN-2-ONE

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	ACE	1	Mod. Amino Acid	ACETYL GROUP
2	MCM	1	Mod. Amino Acid	7-AMINO-4-METHYL-CHROMEN-2-ONE

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN B:102 , HOH B:169 , HOH B:193	BINDING SITE FOR RESIDUE ACE C 1

(no "SS Bond" information available for 1VAI)

(no "Cis Peptide Bond" information available for 1VAI)

(no "SAP(SNP)/Variant" information available for 1VAI)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CSA_PPIASE_2	PS50072	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	PPIA_ECO57	35-188	2	A:11-164 B:11-164
				PPIA_ECOL6	35-188	2	A:11-164 B:11-164
				PPIA_ECOLI	35-188	2	A:11-164 B:11-164
2	CSA_PPIASE_1	PS00170	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	PPIA_ECO57	65-82	2	A:41-58 B:41-58
				PPIA_ECOL6	65-82	2	A:41-58 B:41-58
				PPIA_ECOLI	65-82	2	A:41-58 B:41-58

Biological Unit 1 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CSA_PPIASE_2	PS50072	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	PPIA_ECO57	35-188	1	A:11-164 -
				PPIA_ECOL6	35-188	1	A:11-164 -
				PPIA_ECOLI	35-188	1	A:11-164 -
2	CSA_PPIASE_1	PS00170	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	PPIA_ECO57	65-82	1	A:41-58 -
				PPIA_ECOL6	65-82	1	A:41-58 -
				PPIA_ECOLI	65-82	1	A:41-58 -

Biological Unit 2 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CSA_PPIASE_2	PS50072	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	PPIA_ECO57	35-188	1	- B:11-164
				PPIA_ECOL6	35-188	1	- B:11-164
				PPIA_ECOLI	35-188	1	- B:11-164
2	CSA_PPIASE_1	PS00170	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	PPIA_ECO57	65-82	1	- B:41-58
				PPIA_ECOL6	65-82	1	- B:41-58
				PPIA_ECOLI	65-82	1	- B:41-58

(no "Exon" information available for 1VAI)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:166
 aligned with PPIA_ECO57 | P0AFL5 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:166
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      
           PPIA_ECO57    25 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190
               SCOP domains d1vaia_ A: Peptidyl-prolyl cis-trans isomerase A, PpiA                                                                                                                 SCOP domains
               CATH domains 1vaiA00 A:1-166 Cyclophilin                                                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..eeeeeee....hhhhhhhhhhhhhh.....ee..eee...eeee..................hhhhh......eeee............eeee...hhhhh.........eeeeeeehhhhhhhhhh..eeee..eeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------CSA_PPIASE_2  PDB: A:11-164 UniProt: 35-188                                                                                                               -- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ----------------------------------------CSA_PPIASE_1      ------------------------------------------------------------------------------------------------------------ PROSITE (6)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vai A   1 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain A from PDB  Type:PROTEIN  Length:166
 aligned with PPIA_ECOL6 | P0AFL4 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:166
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      
           PPIA_ECOL6    25 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190
               SCOP domains d1vaia_ A: Peptidyl-prolyl cis-trans isomerase A, PpiA                                                                                                                 SCOP domains
               CATH domains 1vaiA00 A:1-166 Cyclophilin                                                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..eeeeeee....hhhhhhhhhhhhhh.....ee..eee...eeee..................hhhhh......eeee............eeee...hhhhh.........eeeeeeehhhhhhhhhh..eeee..eeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------CSA_PPIASE_2  PDB: A:11-164 UniProt: 35-188                                                                                                               -- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----------------------------------------CSA_PPIASE_1      ------------------------------------------------------------------------------------------------------------ PROSITE (4)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vai A   1 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain A from PDB  Type:PROTEIN  Length:166
 aligned with PPIA_ECOLI | P0AFL3 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:166
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      
           PPIA_ECOLI    25 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190
               SCOP domains d1vaia_ A: Peptidyl-prolyl cis-trans isomerase A, PpiA                                                                                                                 SCOP domains
               CATH domains 1vaiA00 A:1-166 Cyclophilin                                                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..eeeeeee....hhhhhhhhhhhhhh.....ee..eee...eeee..................hhhhh......eeee............eeee...hhhhh.........eeeeeeehhhhhhhhhh..eeee..eeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------CSA_PPIASE_2  PDB: A:11-164 UniProt: 35-188                                                                                                               -- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ----------------------------------------CSA_PPIASE_1      ------------------------------------------------------------------------------------------------------------ PROSITE (5)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vai A   1 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain B from PDB  Type:PROTEIN  Length:166
 aligned with PPIA_ECO57 | P0AFL5 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:166
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      
           PPIA_ECO57    25 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190
               SCOP domains d1vaib_ B: Peptidyl-prolyl cis-trans isomerase A, PpiA                                                                                                                 SCOP domains
               CATH domains 1vaiB00 B:1-166 Cyclophilin                                                                                                                                            CATH domains
           Pfam domains (1) -----Pro_isomerase-1vaiB01 B:6-164                                                                                                                                  -- Pfam domains (1)
           Pfam domains (2) -----Pro_isomerase-1vaiB02 B:6-164                                                                                                                                  -- Pfam domains (2)
         Sec.struct. author .....eeeeee..eeeeeee....hhhhhhhhhhhhhh.....ee..eee...eeee..................hhhhh......eeee............eeee...hhhhh.........eeeeeeehhhhhhhhhh..eeee..eeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------CSA_PPIASE_2  PDB: B:11-164 UniProt: 35-188                                                                                                               -- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ----------------------------------------CSA_PPIASE_1      ------------------------------------------------------------------------------------------------------------ PROSITE (6)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vai B   1 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain B from PDB  Type:PROTEIN  Length:166
 aligned with PPIA_ECOL6 | P0AFL4 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:166
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      
           PPIA_ECOL6    25 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190
               SCOP domains d1vaib_ B: Peptidyl-prolyl cis-trans isomerase A, PpiA                                                                                                                 SCOP domains
               CATH domains 1vaiB00 B:1-166 Cyclophilin                                                                                                                                            CATH domains
           Pfam domains (1) -----Pro_isomerase-1vaiB01 B:6-164                                                                                                                                  -- Pfam domains (1)
           Pfam domains (2) -----Pro_isomerase-1vaiB02 B:6-164                                                                                                                                  -- Pfam domains (2)
         Sec.struct. author .....eeeeee..eeeeeee....hhhhhhhhhhhhhh.....ee..eee...eeee..................hhhhh......eeee............eeee...hhhhh.........eeeeeeehhhhhhhhhh..eeee..eeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------CSA_PPIASE_2  PDB: B:11-164 UniProt: 35-188                                                                                                               -- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----------------------------------------CSA_PPIASE_1      ------------------------------------------------------------------------------------------------------------ PROSITE (4)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vai B   1 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain B from PDB  Type:PROTEIN  Length:166
 aligned with PPIA_ECOLI | P0AFL3 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:166
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      
           PPIA_ECOLI    25 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190
               SCOP domains d1vaib_ B: Peptidyl-prolyl cis-trans isomerase A, PpiA                                                                                                                 SCOP domains
               CATH domains 1vaiB00 B:1-166 Cyclophilin                                                                                                                                            CATH domains
           Pfam domains (1) -----Pro_isomerase-1vaiB01 B:6-164                                                                                                                                  -- Pfam domains (1)
           Pfam domains (2) -----Pro_isomerase-1vaiB02 B:6-164                                                                                                                                  -- Pfam domains (2)
         Sec.struct. author .....eeeeee..eeeeeee....hhhhhhhhhhhhhh.....ee..eee...eeee..................hhhhh......eeee............eeee...hhhhh.........eeeeeeehhhhhhhhhh..eeee..eeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------CSA_PPIASE_2  PDB: B:11-164 UniProt: 35-188                                                                                                               -- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ----------------------------------------CSA_PPIASE_1      ------------------------------------------------------------------------------------------------------------ PROSITE (5)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vai B   1 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain C from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1vai C   1 xAAPAx   6
                            |    |
                            1-ACE|
                                 6-MCM

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Cyclophilin-like (169)

Superfamily: Cyclophilin-like (169)

Family: Cyclophilin (peptidylprolyl isomerase) (160)

Protein domain: Peptidyl-prolyl cis-trans isomerase A, PpiA (8)

Escherichia coli [TaxId: 562] (7)

1a	d1vaia_	A:
1b	d1vaib_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Cyclophilin (95)

Homologous Superfamily: Cyclophilin (95)

Escherichia coli. Organism_taxid: 562. (3)

1a	1vaiA00	A:1-166
1b	1vaiB00	B:1-166

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Cyclophil-like (65)

Family: Pro_isomerase (53)

Escherichia coli O157:H7 (2)

1a	Pro_isomerase-1vaiB01	B:6-164
1b	Pro_isomerase-1vaiB02	B:6-164

Asymmetric Unit(hide GO term definitions)

Chain A,B (PPIA_ECOLI | P0AFL3)

molecular function
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
	GO:0000413	protein peptidyl-prolyl isomerization	The modification of a protein by cis-trans isomerization of a proline residue.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain A,B (PPIA_ECOL6 | P0AFL4)

molecular function
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
	GO:0000413	protein peptidyl-prolyl isomerization	The modification of a protein by cis-trans isomerization of a proline residue.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain A,B (PPIA_ECO57 | P0AFL5)

molecular function
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
	GO:0000413	protein peptidyl-prolyl isomerization	The modification of a protein by cis-trans isomerization of a proline residue.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric Unit
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	Cis Peptide Bonds
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	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
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	1vai
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		Comparative Protein Structure Models	:	ModBase
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	PPIA_ECOL6 \| P0AFL4
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	PPIA_ECOLI \| P0AFL3
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	5.2.1.8
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

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	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	PPIA_ECO57 \| P0AFL5
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	PPIA_ECOL6 \| P0AFL4
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	PPIA_ECOLI \| P0AFL3
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	PPIA_ECO57 \| P0AFL5	:	1clh 1j2a 1v9t
	PPIA_ECOL6 \| P0AFL4	:	1clh 1j2a 1v9t
	PPIA_ECOLI \| P0AFL3	:	1clh 1j2a 1v9t

1j2a	CYCLOPHILIN B K163T MUTANT
1v9t	CYCLOPHILIN B K163T MUTANT BOUND TO SUCCINYL-ALA-PRO-ALA-P- NITROANILIDE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (1, 2)

Gene Ontology (6, 16)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File