1VA5 - JenaLib

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Title :   ANTIGEN 85C WITH OCTYLTHIOGLUCOSIDE IN ACTIVE SITE

Authors :   D. R. Ronning, V. Vissa, G. S. Besra, J. T. Belisle, J. C. Sacchettini, Tb Structural Genomics Consortium (Tbsgc)

Date :   11 Feb 04 (Deposition) - 06 Jul 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.02

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Alpha-Beta Hydrolase, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. R. Ronning, V. Vissa, G. S. Besra, J. T. Belisle, J. C. Sacchettini
Mycobacterium Tuberculosis Antigen 85A And 85C Structures Confirm Binding Orientation And Conserved Substrate Specificity
J. Biol. Chem. V. 279 36771 2004
PubMed-ID: 15192106 | Reference-DOI: 10.1074/JBC.M400811200
(for further references see the PDB file header)

Molecule 1 - ANTIGEN 85-C
	Chains	:	A, B
	EC Number	:	2.3.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET29
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	FBPC2
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	1773

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	SOG	4	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	SOG	2	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	SOG	2	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:39 , LEU A:40 , ARG A:41 , SER A:124 , PHE A:150 , TRP A:158 , ALA A:165 , HIS A:260 , TRP A:262 , HOH A:2037	BINDING SITE FOR RESIDUE SOG A 1001
2	AC2	SOFTWARE	GLY B:39 , LEU B:40 , ARG B:41 , SER B:124 , TRP B:158 , LEU B:161 , ILE B:162 , ALA B:165 , LEU B:227 , HIS B:260 , TRP B:262 , HOH B:2039	BINDING SITE FOR RESIDUE SOG B 1002
3	AC3	SOFTWARE	ASN A:152 , TRP A:158 , LEU A:230 , ARG A:233 , THR A:234 , THR A:237 , TRP B:157 , LEU B:161 , LEU B:164	BINDING SITE FOR RESIDUE SOG A 1003
4	AC4	SOFTWARE	TRP A:157 , LEU A:161 , ASN B:152 , GLU B:155 , TRP B:158 , LEU B:230 , ARG B:233 , THR B:234 , THR B:237	BINDING SITE FOR RESIDUE SOG B 1004

(no "SS Bond" information available for 1VA5)

(no "Cis Peptide Bond" information available for 1VA5)

(no "SAP(SNP)/Variant" information available for 1VA5)

(no "PROSITE Motif" information available for 1VA5)

(no "Exon" information available for 1VA5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:283
 aligned with A85C_MYCTO | P9WQN8 from UniProtKB/Swiss-Prot  Length:340

    Alignment length:283
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325   
           A85C_MYCTO    46 AFSRPGLPVEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLNG 328
               SCOP domains d1va5a_ A: Antigen 85c                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1va5A00 A:0-282  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeee....eeeeeeee.....eeee..........hhhhhhhhhhhhhh....eeeee........................hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhh...hhhhhhh...hhhhhhh....hhhhhhhhh.eeeee............hhhhhhhhhhhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1va5 A   0 MFSRPGLPVEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLNG 282
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279

Chain A from PDB  Type:PROTEIN  Length:283
 aligned with A85C_MYCTU | P9WQN9 from UniProtKB/Swiss-Prot  Length:340

    Alignment length:283
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325   
           A85C_MYCTU    46 AFSRPGLPVEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLNG 328
               SCOP domains d1va5a_ A: Antigen 85c                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1va5A00 A:0-282  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeee....eeeeeeee.....eeee..........hhhhhhhhhhhhhh....eeeee........................hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhh...hhhhhhh...hhhhhhh....hhhhhhhhh.eeeee............hhhhhhhhhhhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1va5 A   0 MFSRPGLPVEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLNG 282
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279

Chain B from PDB  Type:PROTEIN  Length:283
 aligned with A85C_MYCTO | P9WQN8 from UniProtKB/Swiss-Prot  Length:340

    Alignment length:283
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325   
           A85C_MYCTO    46 AFSRPGLPVEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLNG 328
               SCOP domains d1va5b_ B: Antigen 85c                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1va5B00 B:0-282  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                       CATH domains
           Pfam domains (1) ---------------Esterase-1va5B01 B:15-276                                                                                                                                                                                                                                             ------ Pfam domains (1)
           Pfam domains (2) ---------------Esterase-1va5B02 B:15-276                                                                                                                                                                                                                                             ------ Pfam domains (2)
         Sec.struct. author ........eeeeeeee....eeeeeeee.....eeee..........hhhhhhhhhhhhhh....eeeee........................hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhh...hhhhhhh....hhhhhh....hhhhhhhh..eeeee............hhhhhhhhhhhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1va5 B   0 MFSRPGLPVEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLNG 282
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279

Chain B from PDB  Type:PROTEIN  Length:283
 aligned with A85C_MYCTU | P9WQN9 from UniProtKB/Swiss-Prot  Length:340

    Alignment length:283
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325   
           A85C_MYCTU    46 AFSRPGLPVEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLNG 328
               SCOP domains d1va5b_ B: Antigen 85c                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1va5B00 B:0-282  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                       CATH domains
           Pfam domains (1) ---------------Esterase-1va5B01 B:15-276                                                                                                                                                                                                                                             ------ Pfam domains (1)
           Pfam domains (2) ---------------Esterase-1va5B02 B:15-276                                                                                                                                                                                                                                             ------ Pfam domains (2)
         Sec.struct. author ........eeeeeeee....eeeeeeee.....eeee..........hhhhhhhhhhhhhh....eeeee........................hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhh...hhhhhhh....hhhhhh....hhhhhhhh..eeeee............hhhhhhhhhhhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1va5 B   0 MFSRPGLPVEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLNG 282
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: alpha/beta-Hydrolases (971)

Superfamily: alpha/beta-Hydrolases (971)

Family: Mycobacterial antigens (10)

Protein domain: Antigen 85c (3)

Mycobacterium tuberculosis [TaxId: 1773] (3)

1a	d1va5a_	A:
1b	d1va5b_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1820, no name defined] (692)

Mycobacterium tuberculosis. Organism_taxid: 1773. (3)

1a	1va5A00	A:0-282
1b	1va5B00	B:0-282

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: AB_hydrolase (347)

Family: Esterase (10)

Mycobacterium tuberculosis (2)

1a	Esterase-1va5B01	B:15-276
1b	Esterase-1va5B02	B:15-276

Asymmetric Unit(hide GO term definitions)

Chain A,B (A85C_MYCTO | P9WQN8)

molecular function
	GO:0004144	diacylglycerol O-acyltransferase activity	Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
	GO:0050348	trehalose O-mycolyltransferase activity	Catalysis of the reaction: 2 alpha,alpha'-trehalose 6-mycolate = alpha,alpha'-trehalose 6,6'-bismycolate + alpha,alpha-trehalose.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain A,B (A85C_MYCTU | P9WQN9)

molecular function
	GO:0004144	diacylglycerol O-acyltransferase activity	Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
	GO:0050348	trehalose O-mycolyltransferase activity	Catalysis of the reaction: 2 alpha,alpha'-trehalose 6-mycolate = alpha,alpha'-trehalose 6,6'-bismycolate + alpha,alpha-trehalose.
biological process
	GO:0009247	glycolipid biosynthetic process	The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide).
	GO:0006869	lipid transport	The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
	GO:0071769	mycolate cell wall layer assembly	The aggregation, arrangement and bonding together of a set of components, including arabinogalactan mycolate and trehalose dimycolate, to form the mycolate layer of the Actinobacterium-type cell wall. The mycolate layer is physically attached to the peptidoglycan layer.
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
cellular component
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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1dqy	SAME PROTEIN WITH COVALENT INHIBITOR
1dqz	SAME PROTEIN WITH NOTHING BOUND
1f0n	HOMOLOGOUS PROTEIN
1f0p	HOMOLOGOUS PROTEIN WITH TREHALOSE BOUND RELATED ID: RV0129C RELATED DB: TARGETDB

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

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