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(-) Description

Title :  CRYSTAL STRUCTURE OF A HYDROLASE
 
Authors :  N. Tanaka, M. Nakanishi, Y. Kusakabe, K. Shiraiwa, Y. Kitade, K. T. Naka
Date :  03 Jan 04  (Deposition) - 26 Oct 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Tanaka, M. Nakanishi, Y. Kusakabe, K. Shiraiwa, S. Yabe, Y. Ito, Y. Kitade, K. T. Nakamura
Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From The Human Malaria Parasite Plasmodium Falciparum
J. Mol. Biol. V. 343 1007 2004
PubMed-ID: 15476817  |  Reference-DOI: 10.1016/J.JMB.2004.08.104

(-) Compounds

Molecule 1 - ADENOSYLHOMOCYSTEINASE
    Chains: A, B, C, D
    EC Number: 3.3.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: 3D7

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1ADN4Ligand/IonADENOSINE
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:201 , THR A:202 , THR A:203 , ASN A:235 , GLY A:264 , GLY A:266 , ASP A:267 , VAL A:268 , THR A:286 , GLU A:287 , ILE A:288 , ASP A:289 , CYS A:292 , CYS A:319 , THR A:320 , GLY A:321 , ASN A:322 , ILE A:343 , GLY A:344 , HIS A:345 , LEU A:389 , ASN A:391 , HIS A:398 , ADN A:502 , HOH A:504 , HOH A:523 , HOH A:533 , HOH A:576 , GLN B:460 , LYS B:473 , TYR B:477BINDING SITE FOR RESIDUE NAD A 501
2AC2SOFTWAREHIS A:54 , THR A:56 , GLU A:58 , ASP A:134 , GLU A:200 , THR A:201 , LYS A:230 , ASP A:234 , LEU A:389 , THR A:396 , HIS A:398 , MET A:403 , NAD A:501BINDING SITE FOR RESIDUE ADN A 502
3AC3SOFTWAREGLN A:460 , LYS A:473 , TYR A:477 , THR B:201 , THR B:202 , THR B:203 , ASN B:235 , GLY B:264 , GLY B:266 , ASP B:267 , VAL B:268 , THR B:286 , GLU B:287 , ILE B:288 , ASP B:289 , CYS B:292 , CYS B:319 , THR B:320 , GLY B:321 , ASN B:322 , ILE B:343 , GLY B:344 , HIS B:345 , LEU B:389 , ASN B:391 , HIS B:398 , ADN B:1502 , HOH B:1503 , HOH B:1546BINDING SITE FOR RESIDUE NAD B 501
4AC4SOFTWAREHIS B:54 , THR B:56 , GLU B:58 , ASP B:134 , GLU B:200 , THR B:201 , LYS B:230 , ASP B:234 , LEU B:389 , THR B:396 , HIS B:398 , MET B:403 , NAD B:501 , HOH B:1537BINDING SITE FOR RESIDUE ADN B 1502
5AC5SOFTWARETHR C:201 , THR C:202 , THR C:203 , ASN C:235 , GLY C:264 , GLY C:266 , ASP C:267 , VAL C:268 , THR C:286 , GLU C:287 , ILE C:288 , ASP C:289 , CYS C:292 , CYS C:319 , THR C:320 , GLY C:321 , ASN C:322 , ILE C:343 , GLY C:344 , HIS C:345 , LEU C:389 , ASN C:391 , HIS C:398 , ADN C:2502 , HOH C:2519 , HOH C:2525 , HOH C:2529 , HOH C:2536 , HOH C:2549 , GLN D:460 , LYS D:473 , TYR D:477BINDING SITE FOR RESIDUE NAD C 501
6AC6SOFTWARELEU C:53 , HIS C:54 , THR C:56 , GLU C:58 , ASP C:134 , GLU C:200 , THR C:201 , LYS C:230 , ASP C:234 , LEU C:389 , THR C:396 , HIS C:398 , MET C:403 , PHE C:407 , NAD C:501BINDING SITE FOR RESIDUE ADN C 2502
7AC7SOFTWAREGLN C:460 , LYS C:473 , TYR C:477 , THR D:201 , THR D:202 , THR D:203 , ASN D:235 , GLY D:264 , GLY D:266 , ASP D:267 , VAL D:268 , THR D:286 , GLU D:287 , ILE D:288 , ASP D:289 , CYS D:292 , CYS D:319 , THR D:320 , GLY D:321 , ASN D:322 , ILE D:343 , GLY D:344 , HIS D:345 , LEU D:389 , ASN D:391 , HIS D:398 , ADN D:3502 , HOH D:3549 , HOH D:3579 , HOH D:3597BINDING SITE FOR RESIDUE NAD D 501
8AC8SOFTWAREHIS D:54 , THR D:56 , GLU D:58 , ASP D:134 , GLU D:200 , THR D:201 , LYS D:230 , ASP D:234 , LEU D:389 , THR D:396 , GLY D:397 , HIS D:398 , MET D:403 , NAD D:501 , HOH D:3547BINDING SITE FOR RESIDUE ADN D 3502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1V8B)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:470 -Pro A:471
2Gly B:470 -Pro B:471
3Gly C:470 -Pro C:471
4Gly D:470 -Pro D:471

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1V8B)

(-) PROSITE Motifs  (2, 8)

Asymmetric/Biological Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADOHCYASE_1PS00738 S-adenosyl-L-homocysteine hydrolase signature 1.SAHH_PLAF777-91
 
 
 		  4A:77-91
B:77-91
C:77-91
D:77-91
2ADOHCYASE_2PS00739 S-adenosyl-L-homocysteine hydrolase signature 2.SAHH_PLAF7257-274
 
 
 		  4A:257-274
B:257-274
C:257-274
D:257-274

(-) Exons   (0, 0)

(no "Exon" information available for 1V8B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:476
 aligned with SAHH_PLAF7 | P50250 from UniProtKB/Swiss-Prot  Length:479

    Alignment length:476
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473      
           SAHH_PLAF7     4 NKSKVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479
               SCOP domains d1v8ba2 A:4-234,A:398-479 S-adenosylhomocystein hydrolase                                                                                                                                                                              d1v8ba1 A:235-397 S-adenosylhomocystein hydrolase                                                                                                                  d1v8ba2 A:4-234,A:398-479 S-adenosylhomocystein hydrolase                          SCOP domains
               CATH domains 1v8bA01 A:4-236,A:398-479  [code=3.40.50.1480, no name defined]                                                                                                                                                                          1v8bA02 A:237-397 NAD(P)-binding Rossmann-like Domain                                                                                                            1v8bA01 A:4-236,A:398-479  [code=3.40.50.1480, no name defined]                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh..hhhhhhhhhhh.........eeeee...hhhhhhhhhhhhhh..eeeee.......hhhhhhhhh....eeee.....hhhhhhhhhhhhhh..........eeee..hhhhhhhhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhh...hhhhhhhh...eeee.hhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh.eeeee..hhhhhhhhhh...ee.hhhhhh....eeee........hhhhhh......eeee........hhhhhhh....eeeeee..eeeee.....eeeee.hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.........ee..hhhhhhhhhhhhhhhhh......hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------ADOHCYASE_1    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------ADOHCYASE_2       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v8b A   4 NKSKVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473      


Chain B from PDB  Type:PROTEIN  Length:476
 aligned with SAHH_PLAF7 | P50250 from UniProtKB/Swiss-Prot  Length:479

    Alignment length:476
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473      
           SAHH_PLAF7     4 NKSKVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479
               SCOP domains d1v8bb2 B:4-234,B:398-479 S-adenosylhomocystein hydrolase                                                                                                                                                                              d1v8bb1 B:235-397 S-adenosylhomocystein hydrolase                                                                                                                  d1v8bb2 B:4-234,B:398-479 S-adenosylhomocystein hydrolase                          SCOP domains
               CATH domains 1v8bB01 B:4-236,B:398-479  [code=3.40.50.1480, no name defined]                                                                                                                                                                          1v8bB02 B:237-397 NAD(P)-binding Rossmann-like Domain                                                                                                            1v8bB01 B:4-236,B:398-479  [code=3.40.50.1480, no name defined]                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh..hhhhhhhhhhh.........eeeee...hhhhhhhhhhhhhh..eeeee.......hhhhhhhhh....eeee.....hhhhhhhhhhhhhh..........eeee..hhhhhhhhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhh...hhhhhhhh...eeee.hhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh.eeeee..hhhhhhhhhh...ee.hhhhhh....eeee........hhhhhh......eeee........hhhhhhh....eeeeee..eeeee.....eeeee.hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.........ee..hhhhhhhhhhhhh..........hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------ADOHCYASE_1    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------ADOHCYASE_2       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v8b B   4 NKSKVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473      


Chain C from PDB  Type:PROTEIN  Length:476
 aligned with SAHH_PLAF7 | P50250 from UniProtKB/Swiss-Prot  Length:479

    Alignment length:476
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473      
           SAHH_PLAF7     4 NKSKVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479
               SCOP domains d1v8bc2 C:4-234,C:398-479 S-adenosylhomocystein hydrolase                                                                                                                                                                              d1v8bc1 C:235-397 S-adenosylhomocystein hydrolase                                                                                                                  d1v8bc2 C:4-234,C:398-479 S-adenosylhomocystein hydrolase                          SCOP domains
               CATH domains 1v8bC01 C:4-236,C:398-479  [code=3.40.50.1480, no name defined]                                                                                                                                                                          1v8bC02 C:237-397 NAD(P)-binding Rossmann-like Domain                                                                                                            1v8bC01 C:4-236,C:398-479  [code=3.40.50.1480, no name defined]                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh..hhhhhhhhhhh.........eeeee...hhhhhhhhhhhhhh..eeeee.......hhhhhhhhh....eeee.....hhhhhhhhhhhhhh..........eeee..hhhhhhhhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhh...hhhhhhhh...eeee.hhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh.eeeee..hhhhhhhhhh...ee.hhhhhh....eeee........hhhhhh......eeee........hhhhhhh....eeeeee..eeeee.....eeeee.hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.........ee..hhhhhhhhhhhhh..........hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------ADOHCYASE_1    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------ADOHCYASE_2       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v8b C   4 NKSKVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473      


Chain D from PDB  Type:PROTEIN  Length:476
 aligned with SAHH_PLAF7 | P50250 from UniProtKB/Swiss-Prot  Length:479

    Alignment length:476
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473      
           SAHH_PLAF7     4 NKSKVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479
               SCOP domains d1v8bd2 D:4-234,D:398-479 S-adenosylhomocystein hydrolase                                                                                                                                                                              d1v8bd1 D:235-397 S-adenosylhomocystein hydrolase                                                                                                                  d1v8bd2 D:4-234,D:398-479 S-adenosylhomocystein hydrolase                          SCOP domains
               CATH domains 1v8bD01 D:4-236,D:398-479  [code=3.40.50.1480, no name defined]                                                                                                                                                                          1v8bD02 D:237-397 NAD(P)-binding Rossmann-like Domain                                                                                                            1v8bD01 D:4-236,D:398-479  [code=3.40.50.1480, no name defined]                    CATH domains
           Pfam domains (1) AdoHcyase-1v8bD01 D:4-478                                                                                                                                                                                                                                                                                                                                                                                                                                                                  - Pfam domains (1)
           Pfam domains (2) AdoHcyase-1v8bD02 D:4-478                                                                                                                                                                                                                                                                                                                                                                                                                                                                  - Pfam domains (2)
           Pfam domains (3) AdoHcyase-1v8bD03 D:4-478                                                                                                                                                                                                                                                                                                                                                                                                                                                                  - Pfam domains (3)
           Pfam domains (4) AdoHcyase-1v8bD04 D:4-478                                                                                                                                                                                                                                                                                                                                                                                                                                                                  - Pfam domains (4)
           Pfam domains (5) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AdoHcyase_NAD-1v8bD05 D:235-397                                                                                                                                    ---------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AdoHcyase_NAD-1v8bD06 D:235-397                                                                                                                                    ---------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AdoHcyase_NAD-1v8bD07 D:235-397                                                                                                                                    ---------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AdoHcyase_NAD-1v8bD08 D:235-397                                                                                                                                    ---------------------------------------------------------------------------------- Pfam domains (8)
         Sec.struct. author ......hhhhhhhhhhhhhhhh..hhhhhhhhhhh.........eeeee...hhhhhhhhhhhhhh..eeeee.......hhhhhhhhh....eeee.....hhhhhhhhhhhhhh..........eeee..hhhhhhhhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhh...hhhhhhhh...eeee.hhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh.eeeee..hhhhhhhhhh...ee.hhhhhh....eeee........hhhhhh......eeee........hhhhhhh....eeeeee..eeeee.....eeeee.hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.........ee..hhhhhhhhhhhhhhhhh......hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------ADOHCYASE_1    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------ADOHCYASE_2       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v8b D   4 NKSKVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Clan: Form_Glyc_dh (56)
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (SAHH_PLAF7 | P50250)
molecular function
    GO:0004013    adenosylhomocysteinase activity    Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenosine + L-homocysteine.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0033353    S-adenosylmethionine cycle    A cyclic series of interconversions involving S-adenosylmethionine, S-adenosyl-L-homocysteine, L-cysteine, and L-methionine. Couples utilization of the methyl group of SAM with recycling of the homocysteinyl group and regeneration of methionine.
    GO:0006730    one-carbon metabolic process    The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  1v8b
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 Related Entries

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