1V6O - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   PEANUT LECTIN COMPLEXED WITH 10MER PEPTIDE (PVRIWSSATG)

Authors :   S. Kundhavai Natchiar, A. Arockia Jeyaprakash, T. N. C. Ramya, C. J. Thomas, K. Suguna, A. Surolia, M. Vijayan

Date :   02 Dec 03 (Deposition) - 10 Feb 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)

Keywords :   Lectin, Agglutinin, Open Quaternary Association, Monoclinic And Peptide, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Kundhavai Natchiar, A. Arockia Jeyaprakash, T. N. Ramya, C. J. Thomas, K. Suguna, A. Surolia, M. Vijayan
Structural Plasticity Of Peanut Lectin: An X-Ray Analysis Involving Variation In Ph, Ligand Binding And Crystal Structure.
Acta Crystallogr. , Sect. D V. 60 211 2004
PubMed-ID: 14747696 | Reference-DOI: 10.1107/S090744490302849X
(for further references see the PDB file header)

Molecule 1 - GALACTOSE-BINDING LECTIN
	Chains	:	A, B, C, D, E, F, G, H
	Organism Common	:	PEANUT
	Organism Scientific	:	ARACHIS HYPOGAEA
	Organism Taxid	:	3818
	Synonym	:	AGGLUTININ, PNA
	Tissue	:	SEED

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:					E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 16)

No.	Name	Count	Type	Full Name
1	CA	8	Ligand/Ion	CALCIUM ION
2	MN	8	Ligand/Ion	MANGANESE (II) ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MN	-1	Ligand/Ion	MANGANESE (II) ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MN	-1	Ligand/Ion	MANGANESE (II) ION

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:123 , TYR A:125 , ASN A:127 , ASP A:132	BINDING SITE FOR RESIDUE CA A 1237
02	AC2	SOFTWARE	ASP B:83 , ASP B:123 , TYR B:125 , ASN B:127 , ASP B:132	BINDING SITE FOR RESIDUE CA B 2237
03	AC3	SOFTWARE	ASP C:123 , TYR C:125 , ASN C:127 , ASP C:132	BINDING SITE FOR RESIDUE CA C 3237
04	AC4	SOFTWARE	GLY D:104 , ASP D:123 , TYR D:125 , ASN D:127 , ASP D:132	BINDING SITE FOR RESIDUE CA D 4237
05	AC5	SOFTWARE	GLY E:104 , ASP E:123 , TYR E:125 , ASN E:127 , ASP E:132	BINDING SITE FOR RESIDUE CA E 5237
06	AC6	SOFTWARE	ASP F:123 , TYR F:125 , ASN F:127 , ASP F:132	BINDING SITE FOR RESIDUE CA F 6237
07	AC7	SOFTWARE	ASP G:123 , TYR G:125 , ASN G:127 , ASP G:132	BINDING SITE FOR RESIDUE CA G 7237
08	AC8	SOFTWARE	ASP H:123 , TYR H:125 , ASN H:127 , ASP H:132	BINDING SITE FOR RESIDUE CA H 8237
09	AC9	SOFTWARE	GLU A:121 , ASP A:123 , ASP A:132 , HIS A:137 , SER A:147	BINDING SITE FOR RESIDUE MN A 1238
10	BC1	SOFTWARE	GLU B:121 , ASP B:123 , ASP B:132 , HIS B:137 , SER B:147	BINDING SITE FOR RESIDUE MN B 2238
11	BC2	SOFTWARE	GLU C:121 , ASP C:123 , ASP C:132 , HIS C:137	BINDING SITE FOR RESIDUE MN C 3238
12	BC3	SOFTWARE	GLU D:121 , ASP D:123 , ASP D:132 , HIS D:137	BINDING SITE FOR RESIDUE MN D 4238
13	BC4	SOFTWARE	GLU E:121 , ASP E:123 , ASP E:132 , HIS E:137	BINDING SITE FOR RESIDUE MN E 5238
14	BC5	SOFTWARE	GLU F:121 , ASP F:123 , ASP F:132 , HIS F:137 , SER F:147	BINDING SITE FOR RESIDUE MN F 6238
15	BC6	SOFTWARE	GLU G:121 , ASP G:123 , ASP G:132 , HIS G:137	BINDING SITE FOR RESIDUE MN G 7238
16	BC7	SOFTWARE	GLU H:121 , ASP H:123 , ASP H:132 , HIS H:137	BINDING SITE FOR RESIDUE MN H 8238

(no "SS Bond" information available for 1V6O)

Asymmetric Unit

No.	Residues
1	Lys A:77	-	Asp A:78
2	Ala A:82	-	Asp A:83
3	Lys B:77	-	Asp B:78
4	Ala B:82	-	Asp B:83
5	Lys C:77	-	Asp C:78
6	Ala C:82	-	Asp C:83
7	Lys D:77	-	Asp D:78
8	Ala D:82	-	Asp D:83
9	Lys E:77	-	Asp E:78
10	Ala E:82	-	Asp E:83
11	Lys F:77	-	Asp F:78
12	Ala F:82	-	Asp F:83
13	Lys G:77	-	Asp G:78
14	Ala G:82	-	Asp G:83
15	Lys H:77	-	Asp H:78
16	Ala H:82	-	Asp H:83

Asymmetric Unit (3, 24)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LECG_ARAHY_001 *	E	115	V	LECG_ARAHY	---	---	A/B/C/D/E/F/G/H	E	92	V
2	UniProt	VAR_LECG_ARAHY_002 *	K	172	A	LECG_ARAHY	---	---	A/B/C/D/E/F/G/H	K	149	A
3	UniProt	VAR_LECG_ARAHY_003 *	K	185	I	LECG_ARAHY	---	---	A/B/C/D/E/F/G/H	K	162	I
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (3, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LECG_ARAHY_001 *	E	115	V	LECG_ARAHY	---	---	A/B/C/D	E	92	V
2	UniProt	VAR_LECG_ARAHY_002 *	K	172	A	LECG_ARAHY	---	---	A/B/C/D	K	149	A
3	UniProt	VAR_LECG_ARAHY_003 *	K	185	I	LECG_ARAHY	---	---	A/B/C/D	K	162	I
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (3, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LECG_ARAHY_001 *	E	115	V	LECG_ARAHY	---	---	E/F/G/H	E	92	V
2	UniProt	VAR_LECG_ARAHY_002 *	K	172	A	LECG_ARAHY	---	---	E/F/G/H	K	149	A
3	UniProt	VAR_LECG_ARAHY_003 *	K	185	I	LECG_ARAHY	---	---	E/F/G/H	K	162	I
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LECTIN_LEGUME_BETA	PS00307	Legume lectins beta-chain signature.	LECG_ARAHY	141-147	8	A:118-124 B:118-124 C:118-124 D:118-124 E:118-124 F:118-124 G:118-124 H:118-124
2	LECTIN_LEGUME_ALPHA	PS00308	Legume lectins alpha-chain signature.	LECG_ARAHY	221-230	8	A:198-207 B:198-207 C:198-207 D:198-207 E:198-207 F:198-207 G:198-207 H:198-207

Biological Unit 1 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LECTIN_LEGUME_BETA	PS00307	Legume lectins beta-chain signature.	LECG_ARAHY	141-147	4	A:118-124 B:118-124 C:118-124 D:118-124 - - - -
2	LECTIN_LEGUME_ALPHA	PS00308	Legume lectins alpha-chain signature.	LECG_ARAHY	221-230	4	A:198-207 B:198-207 C:198-207 D:198-207 - - - -

Biological Unit 2 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LECTIN_LEGUME_BETA	PS00307	Legume lectins beta-chain signature.	LECG_ARAHY	141-147	4	- - - - E:118-124 F:118-124 G:118-124 H:118-124
2	LECTIN_LEGUME_ALPHA	PS00308	Legume lectins alpha-chain signature.	LECG_ARAHY	221-230	4	- - - - E:198-207 F:198-207 G:198-207 H:198-207

(no "Exon" information available for 1V6O)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:232
 aligned with LECG_ARAHY | P02872 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:232
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253  
           LECG_ARAHY    24 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 255
               SCOP domains d1v6oa_ A: Legume lectin                                                                                                                                                                                                                 SCOP domains
               CATH domains 1v6oA00 A:1-232  [code=2.60.120.200, no name defined]                                                                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.........eeeee..ee.....ee.........eeeeee...ee..........eeeeeeeeeee.........eeeeeeee..........hhhhh.......eeeeeeeeee...hhhhh.....eeeeeeee....eeee.......eeeeeeeee....eeeeeee.....eeeeeee.........eeeeeeeee.......eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------V--------------------------------------------------------A------------I---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v6o A   1 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 232
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain B from PDB  Type:PROTEIN  Length:232
 aligned with LECG_ARAHY | P02872 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:232
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253  
           LECG_ARAHY    24 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 255
               SCOP domains d1v6ob_ B: Legume lectin                                                                                                                                                                                                                 SCOP domains
               CATH domains 1v6oB00 B:1-232  [code=2.60.120.200, no name defined]                                                                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.........eeeee..ee.....ee..........eeeee...ee..........eeeeeeeeeee.........eeeeeeee..........hhhhh.......eeeeeeeeee...hhhhh.....eeeeeeee....eeee......eeeeeeeeee....eeeeeee.....eeeeeee.hhhhhh..eeeeeeee........eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------V--------------------------------------------------------A------------I---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v6o B   1 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 232
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain C from PDB  Type:PROTEIN  Length:232
 aligned with LECG_ARAHY | P02872 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:232
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253  
           LECG_ARAHY    24 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 255
               SCOP domains d1v6oc_ C: Legume lectin                                                                                                                                                                                                                 SCOP domains
               CATH domains 1v6oC00 C:1-232  [code=2.60.120.200, no name defined]                                                                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.........eeeee..ee.....ee.........eeeeee...ee..........eeeeeeeeeee.........eeeeeeee..........hhhhh.......eeeeeeeeee...hhhhh.....eeeeeeee....eeee........eeeeeeee....eeeeeee.....eeeeeee.hhhhh...eeeeeeeee.......eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------V--------------------------------------------------------A------------I---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v6o C   1 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 232
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain D from PDB  Type:PROTEIN  Length:232
 aligned with LECG_ARAHY | P02872 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:232
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253  
           LECG_ARAHY    24 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 255
               SCOP domains d1v6od_ D: Legume lectin                                                                                                                                                                                                                 SCOP domains
               CATH domains 1v6oD00 D:1-232  [code=2.60.120.200, no name defined]                                                                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.........eeeee..ee.....ee.........eeeeee...ee..........eeeeeeeeeee.........eeeeeeee..........hhhhh.......eeeeeeeeee...hhhhh.....eeeeeeee....eeee......eeeeeeeeee....eeeeeee.....eeeeeee.hhhhh...eeeeeeeee.......eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------V--------------------------------------------------------A------------I---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v6o D   1 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 232
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain E from PDB  Type:PROTEIN  Length:232
 aligned with LECG_ARAHY | P02872 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:232
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253  
           LECG_ARAHY    24 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 255
               SCOP domains d1v6oe_ E: Legume lectin                                                                                                                                                                                                                 SCOP domains
               CATH domains 1v6oE00 E:1-232  [code=2.60.120.200, no name defined]                                                                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.........eeeee..ee.....ee.........eeeeee...ee..........eeeeeeeeeee.........eeeeeeee..........hhhhh.......eeeeeeeeee...hhhhh.....eeeeeeee....eeee........eeeeeeee....eeeeeee.....eeeeeee.hhhhhh..eeeeeeeee.......eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------V--------------------------------------------------------A------------I---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v6o E   1 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 232
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain F from PDB  Type:PROTEIN  Length:232
 aligned with LECG_ARAHY | P02872 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:232
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253  
           LECG_ARAHY    24 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 255
               SCOP domains d1v6of_ F: Legume lectin                                                                                                                                                                                                                 SCOP domains
               CATH domains 1v6oF00 F:1-232  [code=2.60.120.200, no name defined]                                                                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.........eeeee..ee.....ee.........eeeeee...ee..........eeeeeeeeeee.........eeeeeeee..........hhhhh.......eeeeeeeeee...hhhhh.....eeeeeeee....eeee.......eeeeeeeee....eeeeeee.....eeeeeee.hhhhh...eeeeeeeee.......eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------V--------------------------------------------------------A------------I---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v6o F   1 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 232
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain G from PDB  Type:PROTEIN  Length:232
 aligned with LECG_ARAHY | P02872 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:232
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253  
           LECG_ARAHY    24 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 255
               SCOP domains d1v6og_ G: Legume lectin                                                                                                                                                                                                                 SCOP domains
               CATH domains 1v6oG00 G:1-232  [code=2.60.120.200, no name defined]                                                                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.........eeeee..ee.....ee.........eeeeee...ee..........eeeeeeeeeee.........eeeeeeee..........hhhhh.......eeeeeeeeee...hhhhh.....eeeeeeee....eeee.......eeeeeeeee....eeeeeee.....eeeeeee.hhhhhh..eeeeeeeee.......eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------V--------------------------------------------------------A------------I---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v6o G   1 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 232
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain H from PDB  Type:PROTEIN  Length:232
 aligned with LECG_ARAHY | P02872 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:232
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253  
           LECG_ARAHY    24 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 255
               SCOP domains d1v6oh_ H: Legume lectin                                                                                                                                                                                                                 SCOP domains
               CATH domains 1v6oH00 H:1-232  [code=2.60.120.200, no name defined]                                                                                                                                                                                    CATH domains
           Pfam domains (1) -Lectin_legB-1v6oH01 H:2-226                                                                                                                                                                                                      ------ Pfam domains (1)
           Pfam domains (2) -Lectin_legB-1v6oH02 H:2-226                                                                                                                                                                                                      ------ Pfam domains (2)
           Pfam domains (3) -Lectin_legB-1v6oH03 H:2-226                                                                                                                                                                                                      ------ Pfam domains (3)
           Pfam domains (4) -Lectin_legB-1v6oH04 H:2-226                                                                                                                                                                                                      ------ Pfam domains (4)
           Pfam domains (5) -Lectin_legB-1v6oH05 H:2-226                                                                                                                                                                                                      ------ Pfam domains (5)
           Pfam domains (6) -Lectin_legB-1v6oH06 H:2-226                                                                                                                                                                                                      ------ Pfam domains (6)
           Pfam domains (7) -Lectin_legB-1v6oH07 H:2-226                                                                                                                                                                                                      ------ Pfam domains (7)
           Pfam domains (8) -Lectin_legB-1v6oH08 H:2-226                                                                                                                                                                                                      ------ Pfam domains (8)
         Sec.struct. author .eeeee...........eeeee..ee.....ee.........eeeeee...ee..........eeeeeeeeeee.........eeeeeeee..........hhhhh.......eeeeeeeeee...hhhhh.....eeeeeeee....eeee......eeeeeeeeee....eeeeeee.....eeeeeee.hhhhh...eeeeeeeee.......eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------V--------------------------------------------------------A------------I---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v6o H   1 AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTSTLITT 232
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Concanavalin A-like lectins/glucanases (797)

Superfamily: Concanavalin A-like lectins/glucanases (797)

Family: Legume lectins (238)

Protein domain: Legume lectin (110)

Peanut (Arachis hypogaea) [TaxId: 3818] (23)

1a	d1v6oa_	A:
1b	d1v6ob_	B:
1c	d1v6oc_	C:
1d	d1v6od_	D:
1e	d1v6oe_	E:
1f	d1v6of_	F:
1g	d1v6og_	G:
1h	d1v6oh_	H:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Jelly Rolls (1293)

Homologous Superfamily: [code=2.60.120.200, no name defined] (421)

Peanut (Arachis hypogaea) (22)

1a	1v6oA00	A:1-232
1b	1v6oB00	B:1-232
1c	1v6oC00	C:1-232
1d	1v6oD00	D:1-232
1e	1v6oE00	E:1-232
1f	1v6oF00	F:1-232
1g	1v6oG00	G:1-232
1h	1v6oH00	H:1-232

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Concanavalin (293)

Family: Lectin_legB (93)

Arachis hypogaea (Peanut) (11)

1a	Lectin_legB-1v6oH01	H:2-226
1b	Lectin_legB-1v6oH02	H:2-226
1c	Lectin_legB-1v6oH03	H:2-226
1d	Lectin_legB-1v6oH04	H:2-226
1e	Lectin_legB-1v6oH05	H:2-226
1f	Lectin_legB-1v6oH06	H:2-226
1g	Lectin_legB-1v6oH07	H:2-226
1h	Lectin_legB-1v6oH08	H:2-226

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (LECG_ARAHY | P02872)

molecular function
	GO:0030246		carbohydrate binding		Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.

Asymmetric Unit
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	Cis Peptide Bonds
		Ala A:82 - Asp A:83	[ RasMol ]
		Ala B:82 - Asp B:83	[ RasMol ]
		Ala C:82 - Asp C:83	[ RasMol ]
		Ala D:82 - Asp D:83	[ RasMol ]
		Ala E:82 - Asp E:83	[ RasMol ]
		Ala F:82 - Asp F:83	[ RasMol ]
		Ala G:82 - Asp G:83	[ RasMol ]
		Ala H:82 - Asp H:83	[ RasMol ]
		Lys A:77 - Asp A:78	[ RasMol ]
		Lys B:77 - Asp B:78	[ RasMol ]
		Lys C:77 - Asp C:78	[ RasMol ]
		Lys D:77 - Asp D:78	[ RasMol ]
		Lys E:77 - Asp E:78	[ RasMol ]
		Lys F:77 - Asp F:78	[ RasMol ]
		Lys G:77 - Asp G:78	[ RasMol ]
		Lys H:77 - Asp H:78	[ RasMol ]

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	1v6o
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1cr7	CRYSTAL STRUCTURES OF THE PEANUT LECTIN-LACTOSE COMPLEX AT ACIDIC PH
1v6i	PEANUT LECTIN-LACTOSE COMPLEX CRYSTALLIZED IN ORTHORHOMBIC FORM AT ACIDIC PH AT 2.15 A
1v6j	PEANUT LECTIN-LACTOSE COMPLEX CRYSTALLIZED IN ORTHORHOMBIC FORM AT ACIDIC PH AT 2.90 A
1v6k	PEANUT LECTIN-LACTOSE COMPLEX IN THE PRESENCE OF PEPTIDE(IWSSAGNVA) AT 2.40 A
1v6l	PEANUT LECTIN-LACTOSE COMPLEX IN THE PRESENCE OF 9MER PEPTIDE (PVIWSSATG) 2.50 A
1v6m	PEANUT LECTIN COMPLEX IN THE PRESENCE OF 9MER PEPTIDE (IWSSAGNVA) AT 2.70 A
1v6n	PEANUT LECTIN WITH 9MER PEPTIDE (PVIWSSATG) AT 3.50 A

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 16)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (16, 16)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (3, 24)

PROSITE Motifs (2, 16)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 8)

CATH Domains (1, 8)

Pfam Domains (1, 8)

Gene Ontology (2, 2)

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