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(-) Description

Title :  THEORETICAL MODEL STRUCTURE OF HRPE, A PUTATIVE ATPASE OF TYPE III SECRETION MACHINERY IN RALSTONIA SOLANACEARUM
 
Authors :  J. Deka, S. Mahanta, A. K. Buragohain, P. R. Nath
Date :  30 Mar 04  (Deposition) - 31 Mar 04  (Release) - 31 Mar 04  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Hydrolase, Atp-Binding, Atpase, Hydrogen Ion Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Deka, S. Mahanta, A. K. Buragohain, P. R. Nath
Structure Of Hrpe, A Putative Atpase Of Type Iii Secretion Machinery In Ralstonia Solanacearum
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HRPE
    Chains: A
    Organism Scientific: RALSTONIA SOLANACEARUM
    Strain: GMI1000

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1V0I)

(-) Sites  (0, 0)

(no "Site" information available for 1V0I)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1V0I)

(-) Cis Peptide Bonds  (1, 1)

Theoretical Model
No.Residues
1Tyr A:347 -Pro A:348

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1V0I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1V0I)

(-) Exons   (0, 0)

(no "Exon" information available for 1V0I)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:439
 aligned with Q52495_RALSL | Q52495 from UniProtKB/TrEMBL  Length:439

    Alignment length:439
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430         
         Q52495_RALSL     1 MTHLALLDSLESAARTTPLIRRFGKVVEVSGTLLRVGGVDVRLGELCTLTEADGTVMQEGEVVGFSEHFALVAPFSGVTGLSRSTRVVPSGRALSVGIGPGLLGRVLDGHGRPADGGPPLDVVEYVPVFANAPDPMTRRLVEHPLATGVRVIDGLATLAEGQRMGIFAPAGVGKSTLMGMFARGTECDVNVIVLIGERGREVREFIEQILGEEGMRRSVVVCATSDRTAVERAKAAYVGTAVAEYFRDQGLRVLLMMDSLTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMSAAGSITAHYTVLAEDESGNDPVAEEVRGILDGHLILSRDIAARNRYPAIDILNSLSRVMTQVMPRDHCDAAGRMRQLLAKYNEVVTLLQMGEYKEGSDPVADAAVQWNDWMESFLRQRTDEWCSPDETRRLLDEIALA 439
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhh............eeeeeee..eeee...........eeeee........eeeee....eeee............eeeeee...eeeehhhhh.eeee...............eeee................ee...hhhhhhhh.ee.....eeeee...hhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhh.......eeeeeeeeee........hhhhhhhhh..eee.hhhhhhhh...................hhhhhhhhhhhhh...hhhhhhhhhh......hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v0i A   1 MTHLALLDSLESAARTTPLIRRFGKVVEVSGTLLRVGGVDVRLGELCTLTEADGTVMQEGEVVGFSEHFALVAPFSGVTGLSRSTRVVPSGRALSVGIGPGLLGRVLDGHGRPADGGPPLDVVEYVPVFANAPDPMTRRLVEHPLATGVRVIDGLATLAEGQRMGIFAPAGVGKSTLMGMFARGTECDVNVIVLIGERGREVREFIEQILGEEGMRRSVVVCATSDRTAVERAKAAYVGTAVAEYFRDQGLRVLLMMDSLTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMSAAGSITAHYTVLAEDESGNDPVAEEVRGILDGHLILSRDIAARNRYPAIDILNSLSRVMTQVMPRDHCDAAGRMRQLLAKYNEVVTLLQMGEYKEGSDPVADAAVQWNDWMESFLRQRTDEWCSPDETRRLLDEIALA 439
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1V0I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1V0I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1V0I)

(-) Gene Ontology  (11, 11)

Theoretical Model(hide GO term definitions)
Chain A   (Q52495_RALSL | Q52495)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0046034    ATP metabolic process    The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0030254    protein secretion by the type III secretion system    The process in which proteins are transferred into the extracellular milieu or directly into host cells by the bacterial type III secretion system; secretion occurs in a continuous process without the distinct presence of periplasmic intermediates and does not involve proteolytic processing of secreted proteins.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0030257    type III protein secretion system complex    A complex of approximately 20 proteins, most of which are located in the cytoplasmic membrane that carries out protein secretion in the bacterial type III secretion system; type III secretion also requires a cytoplasmic, probably membrane-associated ATPase.

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    Tyr A:347 - Pro A:348   [ RasMol ]  
 

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