1UZM - JenaLib

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Biol. Unit 1 - sites (Jmol Viewer)

Title :   MABA FROM MYCOBACTERIUM TUBERCULOSIS

Authors :   M. Cohen-Gonsaud, S. Ducasse, A. Quemard, G. Labesse

Date :   14 Mar 04 (Deposition) - 23 Mar 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.49

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Beta-Ketoacyl Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Cohen-Gonsaud, S. Ducasse, F. Hoh, D. Zerbib, G. Labesse, A. Quemar
Crystal Structure Of Maba From Mycobacterium Tuberculosis, A Reductase Involved In Long-Chain Fatty Acid Biosynthesis.
J. Mol. Biol. V. 320 249 2002
PubMed-ID: 12079383 | Reference-DOI: 10.1016/S0022-2836(02)00463-1

Molecule 1 - 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE
	Chains	:	A, B
	EC Number	:	1.1.1.100
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Mutation	:	YES
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV
	Synonym	:	BETA-KETOACYL-ACP REDUCTASE, 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	CS	4	Ligand/Ion	CESIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CS	-1	Ligand/Ion	CESIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:13 , ALA A:37 , ASP A:38	BINDING SITE FOR RESIDUE CS A1246
2	AC2	SOFTWARE	ALA A:36 , HIS A:40 , HOH A:2052	BINDING SITE FOR RESIDUE CS A1247
3	AC3	SOFTWARE	ALA B:36 , HIS B:40 , HOH B:2032	BINDING SITE FOR RESIDUE CS B1246
4	AC4	SOFTWARE	PHE B:13 , ALA B:37 , ASP B:38 , HOH B:2031	BINDING SITE FOR RESIDUE CS B1247

(no "SS Bond" information available for 1UZM)

Asymmetric Unit

No.	Residues
1	Ser A:142	-	Gly A:143

(no "SAP(SNP)/Variant" information available for 1UZM)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_SHORT	PS00061	Short-chain dehydrogenases/reductases family signature.	FABG_MYCBO	140-168	2	A:140-168 B:140-168
1	ADH_SHORT	PS00061	Short-chain dehydrogenases/reductases family signature.	FABG_MYCTU	140-168	2	A:140-168 B:140-168

Biological Unit 1 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_SHORT	PS00061	Short-chain dehydrogenases/reductases family signature.	FABG_MYCBO	140-168	4	A:140-168 B:140-168
1	ADH_SHORT	PS00061	Short-chain dehydrogenases/reductases family signature.	FABG_MYCTU	140-168	4	A:140-168 B:140-168

(no "Exon" information available for 1UZM)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:227
 aligned with FABG_MYCBO | P0A5Y5 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:237
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       
           FABG_MYCBO     9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVECDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGMGM 245
               SCOP domains d1uzma1 A:9-245 beta-keto acyl carrier protein reductase                                                                                                                                                                                      SCOP domains
               CATH domains 1uzmA00 A:9-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeeee.........eeee....hhhhhhhhhhhhhhhhh...eeeee.....-----..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.....-----.hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: A:140-168    ----------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uzm A   9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSA-----RMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSG-----NQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGMGM 245
                                    18        28        38        48        58        68        78        88    |    -|      108       118       128       138    |    -|      158       168       178       188       198       208       218       228       238       
                                                                                                               93    99                                         143   149

Chain A from PDB  Type:PROTEIN  Length:227
 aligned with FABG_MYCTU | P9WGT3 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:237
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       
           FABG_MYCTU     9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVECDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGMGM 245
               SCOP domains d1uzma1 A:9-245 beta-keto acyl carrier protein reductase                                                                                                                                                                                      SCOP domains
               CATH domains 1uzmA00 A:9-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeeee.........eeee....hhhhhhhhhhhhhhhhh...eeeee.....-----..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.....-----.hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: A:140-168    ----------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uzm A   9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSA-----RMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSG-----NQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGMGM 245
                                    18        28        38        48        58        68        78        88    |    -|      108       118       128       138    |    -|      158       168       178       188       198       208       218       228       238       
                                                                                                               93    99                                         143   149

Chain B from PDB  Type:PROTEIN  Length:211
 aligned with FABG_MYCBO | P0A5Y5 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:237
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       
           FABG_MYCBO     9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVECDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGMGM 245
               SCOP domains d1uzmb_ B: automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains 1uzmB00 B:9-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                           CATH domains
           Pfam domains (1) -------adh_short-1uzmB01 B:16-172                                                                                                                                   ----------------             -------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------adh_short-1uzmB02 B:16-172                                                                                                                                   ----------------             -------------------------------------------- Pfam domains (2)
         Sec.struct. author ........eeee....hhhhhhhhhhhhhhh.eeeeee.........eeee....hhhhhhhhhhhhhhhhh...eeeee.....------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....-------hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.....-------------hhhhh......hhhhhhhhhhhhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: B:140-168    ----------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uzm B   9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSA------MTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVS-------QANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDT-------------ALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGMGM 245
                                    18        28        38        48        58        68        78        88    |    - |     108       118       128       138   |     - |     158       168       178       188         -   |   208       218       228       238       
                                                                                                               93    100                                       142     150                                   188           202

Chain B from PDB  Type:PROTEIN  Length:211
 aligned with FABG_MYCTU | P9WGT3 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:237
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       
           FABG_MYCTU     9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVECDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGMGM 245
               SCOP domains d1uzmb_ B: automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains 1uzmB00 B:9-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                           CATH domains
           Pfam domains (1) -------adh_short-1uzmB01 B:16-172                                                                                                                                   ----------------             -------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------adh_short-1uzmB02 B:16-172                                                                                                                                   ----------------             -------------------------------------------- Pfam domains (2)
         Sec.struct. author ........eeee....hhhhhhhhhhhhhhh.eeeeee.........eeee....hhhhhhhhhhhhhhhhh...eeeee.....------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....-------hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.....-------------hhhhh......hhhhhhhhhhhhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: B:140-168    ----------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uzm B   9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSA------MTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVS-------QANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDT-------------ALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGMGM 245
                                    18        28        38        48        58        68        78        88    |    - |     108       118       128       138   |     - |     158       168       178       188         -   |   208       218       228       238       
                                                                                                               93    100                                       142     150                                   188           202

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv. (12)

1a	1uzmB00	B:9-245
1b	1uzmA00	A:9-245

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: adh_short (92)

Mycobacterium tuberculosis (6)

1a	adh_short-1uzmB01	B:16-172
1b	adh_short-1uzmB02	B:16-172

Asymmetric Unit(hide GO term definitions)

Chain A,B (FABG_MYCTU | P9WGT3)

molecular function
	GO:0004316	3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity	Catalysis of the reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+.
	GO:0018454	acetoacetyl-CoA reductase activity	Catalysis of the reaction: (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH + H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006633	fatty acid biosynthetic process	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0071768	mycolic acid biosynthetic process	The chemical reactions and pathways resulting in the formation of mycolic acids, beta-hydroxy fatty acids with a long alpha-alkyl side chain.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0046459	short-chain fatty acid metabolic process	The chemical reactions and pathways involving fatty acids with a chain length of less than C6.
cellular component
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B (FABG_MYCBO | P0A5Y5)

molecular function
	GO:0004316	3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity	Catalysis of the reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0006633	fatty acid biosynthetic process	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
	GO:0030497	fatty acid elongation	The elongation of a fatty acid chain by the sequential addition of two-carbon units.
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
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		Ser A:142 - Gly A:143	[ RasMol ]

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	FABG_MYCTU \| P9WGT3
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UniProtKB/Swiss-Prot
	FABG_MYCBO \| P0A5Y5	:	1uzl 1uzn
	FABG_MYCTU \| P9WGT3	:	1uzl 1uzn 2ntn

1uzl	MABA FROM MYCOBACTERIUM TUBERCULOSIS
1uzn	MABA FROM MYCOBACTERIUM TUBERCULOSIS RELATED ENTRIES

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (2, 2)

CATH Domains (1, 2)

Pfam Domains (1, 2)

Gene Ontology (13, 19)

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Related Entries Specified in the PDB File