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(-) Description

Title :  TRANSLOCATOR DOMAIN OF AUTOTRANSPORTER NALP FROM NEISSERIA MENINGITIDIS
 
Authors :  C. J. Oomen, P. Van Ulsen, P. Van Gelder, M. Feijen, J. Tommassen, P. G
Date :  02 Mar 04  (Deposition) - 18 Mar 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  X
Keywords :  Autotransporter, Translocator Domain, Membrane Protein, Outer Membrane, Beta-Domain, Beta-Barrel (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. J. Oomen, P. Van Ulsen, P. Van Gelder, M. Feijen, J. Tommassen, P. Gros
Structure Of The Translocator Domain Of A Bacterial Autotransporter
Embo J. V. 23 1257 2004
PubMed-ID: 15014442  |  Reference-DOI: 10.1038/SJ.EMBOJ.7600148

(-) Compounds

Molecule 1 - NALP
    Chains: X
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: OUTER MEMBRANE TRANSLOCATOR DOMAIN, RESIDUES 776-1083
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 487
    Other Details: OUTER MEMBRANE. REFOLDED PROTEIN
    Strain: H44/76
    Synonym: OUTER MEMBRANE PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CXE1Ligand/IonPENTAETHYLENE GLYCOL MONODECYL ETHER
2SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS X:1040 , THR X:1041BINDING SITE FOR RESIDUE SO4 X2086
2AC2SOFTWAREGLY X:855 , GLU X:856 , ASN X:857 , THR X:858BINDING SITE FOR RESIDUE SO4 X2087
3AC3SOFTWAREGLN X:846 , VAL X:848 , LEU X:864 , LEU X:899 , GLY X:954 , GLY X:986 , LEU X:987 , VAL X:1008BINDING SITE FOR RESIDUE CXE X2085

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UYN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1UYN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UYN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1UYN)

(-) Exons   (0, 0)

(no "Exon" information available for 1UYN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:279
 aligned with Q8GKS5_NEIME | Q8GKS5 from UniProtKB/TrEMBL  Length:1083

    Alignment length:299
                                   794       804       814       824       834       844       854       864       874       884       894       904       914       924       934       944       954       964       974       984       994      1004      1014      1024      1034      1044      1054      1064      1074         
        Q8GKS5_NEIME    785 AATVYADSTAAHADMQGRRLKAVSDGLDHNGTGLRVIAQTQQDGGTWEQGGVEGKMRGSTQTVGIAAKTGENTTAAATLGMGRSTWSENSANAKTDSISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGNGWNGLARYSYAGSKQYGNHSGRVGVGYRF 1083
               SCOP domains d1uynx_ X: Translocator domain of NalP                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1uynX00 X:786-1084 autotransporter esta                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeeee...---..eeeeeeeeeeeeeee................eeeeeeeeeeeeeeeee....eeeeeeeeeeee..........-----------------..eeeeeeeeeeeeee..eeeeeeeeeeee..eeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1uyn X  786 AATVYADSTAAHADMQGRRLKAVSDGLDHNGTGLRVIAQTQQDGGTWEQGGVEGKMRGSTQTVGIAAKTGENTTAAATLGMGRSTWSENSANAKTDSISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVP---TGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTG-----------------PHTRLVAGLGADVEFGNGWNGLARYSYAGSKQYGNHSGRVGVGYRF 1084
                                   795       805       815       825       835       845       855       865       875       885       895       905       915       925       935      |  -|      955       965       975       985       995      1005      1015     |   -         -   |  1045      1055      1065      1075         
                                                                                                                                                                                      942 946                                                                       1021              1039
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1UYN)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain X   (Q8GKS5_NEIME | Q8GKS5)
molecular function
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

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 Related Entries

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        Q8GKS5_NEIME | Q8GKS5: 1uyo

(-) Related Entries Specified in the PDB File

1uyo STRUCTURE OF TRANSLOCATOR DOMAIN OF AUTOTRANSPORTER NALP FROM NEISSERIA MENINGITIDIS