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(-)Asym./Biol. Unit
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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RNA BINDING DOMAIN OF BLUETONGUE VIRUS NON-STRUCTURAL PROTEIN 2(NS2)
 
Authors :  C. Butan, H. Van Der Zandt, P. Tucker
Date :  12 Dec 03  (Deposition) - 13 Jul 04  (Release) - 04 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Viral Protein, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Butan, H. Van Der Zandt, P. Tucker
Structure And Assembly Of The Rna Binding Domain Of Bluetongue Virus Non-Structural Protein 2
J. Biol. Chem. V. 279 37613 2004
PubMed-ID: 15155766  |  Reference-DOI: 10.1074/JBC.M400502200

(-) Compounds

Molecule 1 - NON-STRUCTURAL PROTEIN 2
    Chains: A, B
    EC Number: 2.7.7.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: PLYS
    Expression System Vector: PET-22B(+)
    Expression System Vector Type: PLASMID
    Fragment: RNA BINDING DOMAIN, RESIDUES 1-177
    Organism Scientific: BLUETONGUE VIRUS
    Organism Taxid: 197780
    Other Details: SYNTHETIC GENE
    Strain: 8
    Synonym: NS2 PHOSPHOPROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1UTY)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UTY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1UTY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UTY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1UTY)

(-) Exons   (0, 0)

(no "Exon" information available for 1UTY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:153
 aligned with VNS2_BTV10 | P23065 from UniProtKB/Swiss-Prot  Length:357

    Alignment length:153
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157   
           VNS2_BTV10     8 FTKNIFVLDVTAKTLCGAIAKLSSQPYCQIKIGRVVAFKPVKNPEPKGYVLNVPGPGAYRIQDGQDIISLMLTPHGVEATTERWEEWKFEGVSVTPMATRVQYNGVMVDAEIKYCKGMGIVQPYMRNDFDRNEMPDLPGVMRSNYDIRELRQK 160
               SCOP domains d1utya_ A: Nonstructural protein NS2                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhh..hhhhhhhh....eeeeee...eeeeee.....eeeeeee...eeeeeee..eeeeeeee..eeeee.....eeeeeeeeeeeeeeeeee..eeeeeeeeeeee.......eee..hhh..............hhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uty A   8 FTKNIFVLDVTAKTLCGAIAKLSSQPYCQIKIGRVVAFKPVKNPEPKGYVLNVPGPGAYRIQDGQDIISLMLTPHGVEATTERWEEWKFEGVSVTPMATRVQYNGVMVDAEIKYCKGMGIVQPYMRNDFDRNEMPDLPGVMRSNYDIRELRQK 160
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157   


Chain B from PDB  Type:PROTEIN  Length:153
 aligned with VNS2_BTV10 | P23065 from UniProtKB/Swiss-Prot  Length:357

    Alignment length:153
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157   
           VNS2_BTV10     8 FTKNIFVLDVTAKTLCGAIAKLSSQPYCQIKIGRVVAFKPVKNPEPKGYVLNVPGPGAYRIQDGQDIISLMLTPHGVEATTERWEEWKFEGVSVTPMATRVQYNGVMVDAEIKYCKGMGIVQPYMRNDFDRNEMPDLPGVMRSNYDIRELRQK 160
               SCOP domains d1utyb_ B: Nonstructural protein NS2                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) BTV_NS2-1utyB01 B:8-160                                                                                                                                   Pfam domains (1)
           Pfam domains (2) BTV_NS2-1utyB02 B:8-160                                                                                                                                   Pfam domains (2)
         Sec.struct. author .eeeeeee.hhh..hhhhhhhh....eeeeee...eeeeee.....eeeeeee...eeeeeee..eeeeeeee..eeeee.....eeeeeeeeeeeeeeeeee..eeeeeeeeeeee.......eee..hhh..............hhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uty B   8 FTKNIFVLDVTAKTLCGAIAKLSSQPYCQIKIGRVVAFKPVKNPEPKGYVLNVPGPGAYRIQDGQDIISLMLTPHGVEATTERWEEWKFEGVSVTPMATRVQYNGVMVDAEIKYCKGMGIVQPYMRNDFDRNEMPDLPGVMRSNYDIRELRQK 160
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1UTY)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: BTV_NS2] (1)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (VNS2_BTV10 | P23065)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

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