1UTS - JenaLib

Title :   DESIGNED HIV-1 TAR BINDING LIGAND

Authors :   B. Davis, A. I. H. Murchie, F. Aboul-Ela, J. Karn

Date :   10 Dec 03 (Deposition) - 12 Feb 04 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : B  (16x)

Keywords :   Hiv-1, Tar Rna, Drug Design, Antiviral, Ligand Binding, Conformational Change (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. I. H. Murchie, B. Davis, C. Isel, M. Afshar, M. J. Drysdale, J. Bower, A. J. Potter, I. D. Starkey, T. M. Swarbrick, S. Mirza, C. D. Prescott, P. Vaglio, F. Aboul-Ela, J. Karn
Structure-Based Drug Design Targeting An Inactive Rna Conformation: Exploiting The Flexibility Of Hiv-1 Tar Rna
J. Mol. Biol. V. 236 625 2004
PubMed-ID: 15095977 | Reference-DOI: 10.1016/J.JMB.2003.12.028

Compounds

*Molecule 1 - RNA (5'-(GPGPCPAPGPAPUPCPUPGPAPGP CPCPUPGPGPGPAPGPCPUPCPUPCPUPGPCPC) -3')**
	Chains	:	B
	Organism Common	:	HIV-1
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS 1
	Organism Taxid	:	11676
	Other Details	:	CONTAINS TAR BULGE (BINDING SITE FOR HIV-1 TAT) AND STEM-LOOP (BINDING SITE FOR CYCLIN/CDK9
	Other Details - Source	:	29 NUCLEOTIDE SEQUENCE COMPRISING PRIMARY BINDING SITE OF HIV-1 TAT, SYNTHESIZED USING T7 RNA POLYMERASE OFF OF A DNA TEMPLATE
	Synonym	:	HIV-1 TAR RNA
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain B from PDB  Type:RNA  Length:29
                                                            
                  1uts B 17 GGCAGAUCUGAGCCUGGGAGCUCUCUGCC 45
                                    26        36

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SCOP Domains (0, 0)

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