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Title :   CRYSTAL STRUCTURE OF THE BIOTIN CARBOXYLASE SUBUNIT OF PYRUVATE CARBOXYLASE

Authors :   S. Kondo, Y. Nakajima, S. Sugio, J. Yong-Biao, S. Sueda, H. Kondo

Date :   18 Sep 03 (Deposition) - 09 Mar 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Biotin Carboxylase, Pyruvate Carboxylase, Aquifex Aeolicus, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Kondo, Y. Nakajima, S. Sugio, J. Yong-Biao, S. Sueda, H. Kondo
Structure Of The Biotin Carboxylase Subunit Of Pyruvate Carboxylase From Aquifex Aeolicus At 2. 2 A Resolution.
Acta Crystallogr. , Sect. D V. 60 486 2004
PubMed-ID: 14993673 | Reference-DOI: 10.1107/S0907444904000423

Molecule 1 - PYRUVATE CARBOXYLASE N-TERMINAL DOMAIN
	Chains	:	A
	EC Number	:	6.4.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTRC99A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 1-451
	Mutation	:	YES
	Organism Scientific	:	AQUIFEX AEOLICUS
	Organism Taxid	:	224324
	Strain	:	VF5
	Synonym	:	BIOTIN CARBOXYLASE, SUBUNIT OF PYRUVATE CARBOXYLASE

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1ULZ)

(no "Site" information available for 1ULZ)

(no "SS Bond" information available for 1ULZ)

Asymmetric Unit

No.	Residues
1	Tyr A:152	-	Pro A:153
2	Ala A:241	-	Pro A:242

(no "SAP(SNP)/Variant" information available for 1ULZ)

(no "PROSITE Motif" information available for 1ULZ)

(no "Exon" information available for 1ULZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:451
 aligned with O67483_AQUAE | O67483 from UniProtKB/TrEMBL  Length:472

    Alignment length:451
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450 
         O67483_AQUAE     1 MFNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLTIKQEDVKFNGYAIECRINAEDPKKNFAPSTGVIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAVLETYEITGVKTTIPLLINIMKEKDFKAGKFTTKYLEEHPEVFEYEE 451
               SCOP domains d1ulza2 A:1-114 Biotin carboxylase (BC), N-terminal domain                                                        d1ulza3 A:115-328 Biotin carboxylase (BC), domain 2                                                                                                                                                                   d1ulza1 A:329-451 Biotin carboxylase (BC), C-domain                                                                         SCOP domains
               CATH domains 1ulzA01 A:1-129  [code=3.40.50.20, no name defined]                                                                              1ulzA02 A:130-201 ATP-grasp fold, A domain                              1ulzA03 A:202-451 ATP-grasp fold, B domain                                                                                                                                                                                                                 CATH domains
               Pfam domains --CPSase_L_chain-1ulzA03 A:3-109                                                                             ----CPSase_L_D2-1ulzA01 A:114-323                                                                                                                                                                                     -----------Biotin_carb_C-1ulzA02 A:335-441                                                                            ---------- Pfam domains
         Sec.struct. author ....eee..hhhhhhhhhhhhhhhh..eeeeehhhhh.hhhhhhh.eeee.....hhhhhhhhhhhhhhhhh...eee........hhhhhhhhhhh..ee...hhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhh..eeeee.........eee.hhhhhhhhhhhhhhhhhhh.....eeeee.....eeeeeeeee.....eeeeeeeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeee......hhhhhhhhh.hhhhhhhhhhh......hhhhh....eeeeeeee.ee.....ee.......ee......eeeee..............eeeeeeeee.hhhhhhhhhhhhhhh.ee.....hhhhhhhhhhhhhhhhh.........hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ulz A   1 MVNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLTIKQEDVKFNGYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITGVKTTIPLLINIMKEKDFKAGKFTTKYLEEHPEVFEYEE 451
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit(hide GO term definitions)

Chain A (O67483_AQUAE | O67483)


GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0004075	biotin carboxylase activity	Catalysis of the reaction: ATP + biotin-carboxyl-carrier protein + CO2 = ADP + phosphate + carboxybiotin-carboxyl-carrier protein.
GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.

Asymmetric Unit
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	Cis Peptide Bonds
		Ala A:241 - Pro A:242	[ RasMol ]
		Tyr A:152 - Pro A:153	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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