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Description

Title :   SOLUTION STRUCTURE OF RSGI RUH-005, A PDZ DOMAIN IN HUMAN CDNA, KIAA1095

Authors :   T. Hamada, Y. Muto, H. Hirota, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   09 Jul 03 (Deposition) - 09 Jan 04 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Nmr, Pdz Domain, Semaphorin Cytoplasmic Domain Associated Protein, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Hamada, Y. Muto, H. Hirota, S. Yokoyama
Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human Cdna, Kiaa1095
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Molecule 1 - HYPOTHETICAL PROTEIN KIAA1095
	Chains	:	A
	Engineered	:	YES
	Expression System Plasmid	:	P021030-36
	Expression System Vector Type	:	PLASMID
	Fragment	:	PDZ DOMAIN
	Gene	:	KIAA1095
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	CELL-FREE PROTEIN SYNTHESIS
	Synonym	:	RSGI RUH-005, A PDZ DOMAIN IN HUMAN CDNA

Structural Features

Chains, Units


NMR Structure (20x)	:

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1UHP)

Sites (0, 0)

(no "Site" information available for 1UHP)

SS Bonds (0, 0)

(no "SS Bond" information available for 1UHP)

Cis Peptide Bonds (1, 20)

NMR Structure

No.	Model	Residues
1	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20	Glu A:91	-	Pro A:92

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

(no "SAP(SNP)/Variant" information available for 1UHP)

PROSITE Motifs (1, 1)

NMR Structure (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	PZRN3_HUMAN	249-339 419-488	1	A:11-101 -

Exons (4, 4)

NMR Structure (4, 4)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000263666	1a	ENSE00001890354	chr3:73674091-73673254	838	PZRN3_HUMAN	1-241	241	1	A:1-3	3
1.2	ENST00000263666	2	ENSE00001204273	chr3:73657835-73657749	87	PZRN3_HUMAN	242-270	29	1	A:4-32	29
1.3	ENST00000263666	3	ENSE00001204268	chr3:73651612-73651505	108	PZRN3_HUMAN	271-306	36	1	A:33-68	36
1.10b	ENST00000263666	10b	ENSE00001204263	chr3:73453546-73453299	248	PZRN3_HUMAN	307-389	83	1	A:69-107 (gaps)	51
1.13b	ENST00000263666	13b	ENSE00001351136	chr3:73450160-73450073	88	PZRN3_HUMAN	389-418	30	0	-	-
1.14c	ENST00000263666	14c	ENSE00000966855	chr3:73440267-73440169	99	PZRN3_HUMAN	419-451	33	0	-	-
1.15	ENST00000263666	15	ENSE00000966856	chr3:73439029-73438967	63	PZRN3_HUMAN	452-472	21	0	-	-
1.16c	ENST00000263666	16c	ENSE00000966857	chr3:73437220-73437119	102	PZRN3_HUMAN	473-506	34	0	-	-
1.17b	ENST00000263666	17b	ENSE00000966858	chr3:73434936-73434820	117	PZRN3_HUMAN	507-545	39	0	-	-
1.18g	ENST00000263666	18g	ENSE00001414010	chr3:73434081-73431584	2498	PZRN3_HUMAN	546-1066	521	0	-	-

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:107
 aligned with PZRN3_HUMAN | Q9UPQ7 from UniProtKB/Swiss-Prot  Length:1066

    Alignment length:119
                                   248       258       268       278       288       298       308       318       328       338       348         
          PZRN3_HUMAN   239 GGKGEETKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPPSESQLVDTG 357
               SCOP domains d1uhpa_ A: Hypothetical protein KIAA1095                                                                                SCOP domains
               CATH domains 1uhpA00 A:1-107  [code=2.30.42.10, no name defined]                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee........eeee.................eeeee...hhhhhh.......eeeee..ee....hhhhhhhhhhhh...eeeeeee..------....------.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------PDZ  PDB: A:11-101 UniProt: 249-339                                                        ------------------ PROSITE
               Transcript 1 1.1Exon 1.2  PDB: A:4-32        Exon 1.3  PDB: A:33-68              Exon 1.10b  PDB: A:69-107 (gaps) UniProt: 307-389   Transcript 1
                 1uhp A   1 GSSGSSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRT------SGPS------SG 107
                                    10        20        30        40        50        60        70        80        90       100|      104|      | 
                                                                                                                              101    102  |    106 
                                                                                                                                        105

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

NMR Structure

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: PDZ domain-like (299)

Superfamily: PDZ domain-like (299)

Family: PDZ domain (180)

Protein domain: Hypothetical protein KIAA1095 (2)

Human (Homo sapiens) [TaxId: 9606] (2)

d1uhpa_

CATH Domains (1, 1)

NMR Structure

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: Pdz3 Domain (191)

Homologous Superfamily: [code=2.30.42.10, no name defined] (191)

Human (Homo sapiens) (120)

1uhpA00

A:1-107

Pfam Domains (0, 0)

(no "Pfam Domain" information available for 1UHP)

Gene Ontology (8, 8)

NMR Structure(hide GO term definitions)

Chain A (PZRN3_HUMAN | Q9UPQ7)

molecular function
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0061630	ubiquitin protein ligase activity	Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
	GO:0004842	ubiquitin-protein transferase activity	Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0007528	neuromuscular junction development	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a neuromuscular junction.
	GO:0016567	protein ubiquitination	The process in which one or more ubiquitin groups are added to a protein.
cellular component
	GO:0031594	neuromuscular junction	The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a change in post-synaptic potential.

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	Cis Peptide Bonds
		Glu A:91 - Pro A:92	[ RasMol ]

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	1uhp
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Related Entries

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	PZRN3_HUMAN \| Q9UPQ7	:	1wh1

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