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(-) Description

Title :  SOLUTION STRUCTURE OF THE THIRD SH3 DOMAIN OF HUMAN INTERSECTIN 2(KIAA1256)
 
Authors :  S. Suzuki, H. Hatanaka, S. Koshiba, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  03 Jul 03  (Deposition) - 10 Aug 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Beta Barrel, Sh3 Domain, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Suzuki, H. Hatanaka, S. Koshiba, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Third Sh3 Domain Of Human Intersectin 2(Kiaa1256)
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - INTERSECTIN 2
    ChainsA
    EngineeredYES
    Expression System PlasmidP021015-61
    Expression System Vector TypePLASMID
    FragmentSH3 DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsIN VITRO TRANSLATION
    SynonymSH3 DOMAIN-CONTAINING PROTEIN 1B, SH3P18, SH3P18- LIKE WASP ASSOCIATED PROTEIN

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1UHF)

(-) Sites  (0, 0)

(no "Site" information available for 1UHF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UHF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1UHF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UHF)

(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SH3PS50002 Src homology 3 (SH3) domain profile.ITSN2_HUMAN757-818
898-956
981-1039
1127-1186
1053-1117
  2-
-
A:6-63
-
A:68-69

(-) Exons   (5, 5)

NMR Structure (5, 5)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003551231aENSE00001820402chr2:24583583-24583173411ITSN2_HUMAN-00--
1.2bENST000003551232bENSE00002171861chr2:24550984-2455092164ITSN2_HUMAN1-11110--
1.5ENST000003551235ENSE00001764011chr2:24538093-2453800193ITSN2_HUMAN11-42320--
1.6ENST000003551236ENSE00001720994chr2:24536392-2453632964ITSN2_HUMAN42-63220--
1.7ENST000003551237ENSE00001709424chr2:24535244-24535081164ITSN2_HUMAN63-118560--
1.9ENST000003551239ENSE00001771235chr2:24533561-24533358204ITSN2_HUMAN118-186690--
1.10bENST0000035512310bENSE00000722102chr2:24533249-2453315397ITSN2_HUMAN186-218330--
1.12ENST0000035512312ENSE00000808873chr2:24531625-24531486140ITSN2_HUMAN218-265480--
1.13ENST0000035512313ENSE00000722299chr2:24526731-2452666864ITSN2_HUMAN265-286220--
1.14ENST0000035512314ENSE00000722350chr2:24524971-24524834138ITSN2_HUMAN286-332470--
1.15ENST0000035512315ENSE00000808870chr2:24524108-2452402386ITSN2_HUMAN332-361300--
1.16ENST0000035512316ENSE00000722427chr2:24523040-24522778263ITSN2_HUMAN361-448880--
1.17ENST0000035512317ENSE00000722490chr2:24521683-24521534150ITSN2_HUMAN449-498500--
1.18aENST0000035512318aENSE00000722555chr2:24518673-24518533141ITSN2_HUMAN499-545470--
1.19aENST0000035512319aENSE00002183816chr2:24516644-2451655788ITSN2_HUMAN546-575300--
1.20bENST0000035512320bENSE00001620600chr2:24509220-24509081140ITSN2_HUMAN575-621470--
1.21ENST0000035512321ENSE00001679214chr2:24507712-2450763281ITSN2_HUMAN622-648270--
1.22ENST0000035512322ENSE00001705683chr2:24498718-24498582137ITSN2_HUMAN649-694460--
1.23ENST0000035512323ENSE00001650641chr2:24494810-24494635176ITSN2_HUMAN694-753600--
1.24ENST0000035512324ENSE00001605766chr2:24493637-2449354098ITSN2_HUMAN753-785330--
1.25ENST0000035512325ENSE00001768638chr2:24484611-24484430182ITSN2_HUMAN786-846610--
1.26ENST0000035512326ENSE00001642410chr2:24484119-24483975145ITSN2_HUMAN846-894490--
1.27ENST0000035512327ENSE00001784679chr2:24480962-24480757206ITSN2_HUMAN895-963691A:1-22
1.28ENST0000035512328ENSE00001630907chr2:24477300-2447723665ITSN2_HUMAN963-985231A:3-108
1.29ENST0000035512329ENSE00001729710chr2:24475380-24475214167ITSN2_HUMAN985-1040561A:10-6354
1.30ENST0000035512330ENSE00001696254chr2:24471751-2447170646ITSN2_HUMAN1041-1056161A:64-674
1.31aENST0000035512331aENSE00001747856chr2:24471619-24471498122ITSN2_HUMAN1056-1096411A:68-692
1.32ENST0000035512332ENSE00001629269chr2:24469762-2446966697ITSN2_HUMAN1097-1129330--
1.33ENST0000035512333ENSE00001740845chr2:24469189-24468998192ITSN2_HUMAN1129-1193650--
1.35aENST0000035512335aENSE00001785423chr2:24443935-24443814122ITSN2_HUMAN1193-1233410--
1.36ENST0000035512336ENSE00001775662chr2:24440882-24440776107ITSN2_HUMAN1234-1269360--
1.37ENST0000035512337ENSE00001690566chr2:24439101-24438918184ITSN2_HUMAN1269-1330620--
1.38ENST0000035512338ENSE00001665782chr2:24435617-2443551999ITSN2_HUMAN1331-1363330--
1.39ENST0000035512339ENSE00001772990chr2:24433816-24433649168ITSN2_HUMAN1364-1419560--
1.40bENST0000035512340bENSE00001674611chr2:24432902-24432687216ITSN2_HUMAN1420-1491720--
1.41ENST0000035512341ENSE00001615807chr2:24432090-24431969122ITSN2_HUMAN1492-1532410--
1.42aENST0000035512342aENSE00001755618chr2:24431188-2443110683ITSN2_HUMAN1532-1560290--
1.44cENST0000035512344cENSE00001625120chr2:24428166-2442808384ITSN2_HUMAN1560-1588290--
1.45bENST0000035512345bENSE00001636642chr2:24427287-24427114174ITSN2_HUMAN1588-1646590--
1.45fENST0000035512345fENSE00001486636chr2:24426652-24425733920ITSN2_HUMAN1646-1697520--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:69
 aligned with ITSN2_HUMAN | Q9NZM3 from UniProtKB/Swiss-Prot  Length:1697

    Alignment length:113
                                   965       975       985       995      1005      1015      1025      1035      1045      1055      1065   
         ITSN2_HUMAN    956 GSEVKREEPEALYAAVNKKPTSAAYSVGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDQESFGSASKSGASNKKPEIAQVTSAYVASG 1068
               SCOP domains d1                    uhfa_ A: Intersectin 2 (KIAA1256)                                                           SCOP domains
               CATH domains 1u                    hfA00 A:1-69 SH3 Domains                                                                    CATH domains
               Pfam domains -------------------------------SH3_1-1uhfA01 A:12-56                        ------------------------------------- Pfam domains
         Sec.struct. author ..--------------------......eeee...................eeee.eee..eeee......eeehhhhhee..---------....---------------.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE S------------------------SH3  PDB: A:6-63 UniProt: 981-1039                         -------------SH3  PDB: A:68-6 PROSITE
           Transcript 1 (1) 1.27    ---------------------Exon 1.29  PDB: A:10-63 UniProt: 985-1040 [INCOMPLETE]  Exon 1.30       ------------ Transcript 1 (1)
           Transcript 1 (2) -------Exon 1.28  PDB: A:3-10 ----------------------------------------------------------------------Exon 1.31a    Transcript 1 (2)
                1uhf A    1 GS--------------------SGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKD---------SGPS---------------SG   69
                             |       -         -  |     10        20        30        40        50        60  |      -  |  |   -         - | 
                             2                    3                                                          63        64 67              68 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: SH3 (175)

(-) Gene Ontology  (14, 14)

NMR Structure(hide GO term definitions)
Chain A   (ITSN2_HUMAN | Q9NZM3)
molecular function
    GO:0005089    Rho guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005070    SH3/SH2 adaptor activity    Interacting selectively and non-covalently and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68).
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0006897    endocytosis    A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:1903861    positive regulation of dendrite extension    Any process that activates or increases the frequency, rate or extent of dendrite extension.
    GO:0009967    positive regulation of signal transduction    Any process that activates or increases the frequency, rate or extent of signal transduction.
    GO:0035023    regulation of Rho protein signal transduction    Any process that modulates the frequency, rate or extent of Rho protein signal transduction.
cellular component
    GO:0005813    centrosome    A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        ITSN2_HUMAN | Q9NZM31j3t 1udl 1ue9 1uff 3gf9 3jzy 4iio

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