1UAY - JenaLib

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Title :   CRYSTAL STRUCTURE OF TYPE II 3-HYDROXYACYL-COA DEHYDROGENASE FROM THERMUS THERMOPHILUS HB8

Authors :   N. Kunishima, Y. Asada, S. Yokoyama, S. Kuramitsu, M. Miyano, Riken St Genomics/Proteomics Initiative (Rsgi)

Date :   25 Mar 03 (Deposition) - 15 Apr 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Dehydrogenase, Beta Oxidation, Fatty Acid, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Kunishima, Y. Asada, S. Yokoyama, S. Kuramitsu, M. Miyano
Crystal Structure Of Type Ii 3-Hydroxyacyl-Coa Dehydrogenas From Thermus Thermophilus Hb8
To Be Published
PubMed: search

Molecule 1 - TYPE II 3-HYDROXYACYL-COA DEHYDROGENASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET11A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	300852
	Strain	:	HB8

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	ADN	2	Ligand/Ion	ADENOSINE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	ADN	4	Ligand/Ion	ADENOSINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:9 , SER A:12 , ASP A:33 , LEU A:34 , ARG A:35 , GLY A:46 , ASP A:47 , VAL A:48 , ALA A:73 , ALA A:74 , GLY A:75 , HOH A:1160	BINDING SITE FOR RESIDUE ADN A 1001
2	AC2	SOFTWARE	GLU A:63 , GLY B:9 , SER B:12 , ASP B:33 , LEU B:34 , GLY B:46 , ASP B:47 , VAL B:48 , ALA B:73 , ALA B:74 , GLY B:75 , VAL B:100 , HOH B:1008 , HOH B:1041 , HOH B:1083 , HOH B:1149	BINDING SITE FOR RESIDUE ADN B 1002

(no "SS Bond" information available for 1UAY)

Asymmetric Unit

No.	Residues
1	Phe A:203	-	Pro A:204
2	Phe B:203	-	Pro B:204

(no "SAP(SNP)/Variant" information available for 1UAY)

(no "PROSITE Motif" information available for 1UAY)

(no "Exon" information available for 1UAY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:241
 aligned with Q7SIA1_THETH | Q7SIA1 from UniProtKB/TrEMBL  Length:242

    Alignment length:241
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
         Q7SIA1_THETH     2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILENPMLNGEVVRLDGALRMAPR 242
               SCOP domains d1uaya_ A: Type II 3-hydroxyacyl-CoA dehydrogenase                                                                                                                                                                                                SCOP domains
               CATH domains 1uayA00 A:2-242 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhhh.eeeeee........eeee....hhhhhhhhhhhhhhhh.eeeeee.................hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhh.hhhhhhhhhh.........hhhhhhhhhhhhhhh......eeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uay A   2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILENPMLNGEVVRLDGALRMAPR 242
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241

Chain B from PDB  Type:PROTEIN  Length:238
 aligned with Q7SIA1_THETH | Q7SIA1 from UniProtKB/TrEMBL  Length:242

    Alignment length:242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
         Q7SIA1_THETH     1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILENPMLNGEVVRLDGALRMAPR 242
               SCOP domains d1uayb_ B: Type II 3-hydroxyacyl-CoA dehydrogenase                                                                                                                                                                                                 SCOP domains
               CATH domains 1uayB00 B:1-242 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                CATH domains
           Pfam domains (1) --adh_short-1uayB01 B:3-167                                                                                                                                            --------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --adh_short-1uayB02 B:3-167                                                                                                                                            --------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhh.eeeeee........eeee....hhhhhhhhhhhhhhhh.eeeeee.................hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.......----hhhhhhhhhh.........hhhhhhhhhhhhhhh......eeee......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uay B   1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPL----PEKAKASLAAQVPFPPRLGRPEEYAALVLHILENPMLNGEVVRLDGALRMAPR 242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    |  190       200       210       220       230       240  
                                                                                                                                                                                                                  185  190

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Tyrosine-dependent oxidoreductases (503)

Protein domain: Type II 3-hydroxyacyl-CoA dehydrogenase (6)

Thermus thermophilus [TaxId: 274] (1)

1a	d1uaya_	A:
1b	d1uayb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8. (8)

1a	1uayB00	B:1-242
1b	1uayA00	A:2-242

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: adh_short (92)

Thermus thermophilus (1)

1a	adh_short-1uayB01	B:3-167
1b	adh_short-1uayB02	B:3-167

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q7SIA1_THETH | Q7SIA1)

molecular function
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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	Cis Peptide Bonds
		Phe A:203 - Pro A:204	[ RasMol ]
		Phe B:203 - Pro B:204	[ RasMol ]

Biological Unit
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		Biological Unit 1	[ Jena3D ]

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