Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF THE CONSERVED PROTEIN TT1542 FROM THERMUS THERMOPHILUS HB8
 
Authors :  N. Handa, T. Terada, J. R. H. Tame, S. -Y. Park, K. Kinoshita, M. Ota, H. Na S. Kuramitsu, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  12 Mar 03  (Deposition) - 05 Aug 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Rossmann-Like, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Handa, T. Terada, Y. Kamewari, H. Hamana, J. R. H. Tame, S. -Y. Park, K. Kinoshita, M. Ota, H. Nakamura, S. Kuramitsu, M. Shirouzu, S. Yokoyama
Crystal Structure Of The Conserved Protein Tt1542 From Thermus Thermophilus Hb8
Protein Sci. V. 12 1621 2003
PubMed-ID: 12876312  |  Reference-DOI: 10.1110/PS.G03104003

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TT1542
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274
    Synonym: CONSERVED PROTEIN TT1542

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1UAN)

(-) Sites  (0, 0)

(no "Site" information available for 1UAN)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UAN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1UAN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UAN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1UAN)

(-) Exons   (0, 0)

(no "Exon" information available for 1UAN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:220
 aligned with Q84BR2_THETH | Q84BR2 from UniProtKB/TrEMBL  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
         Q84BR2_THETH     1 MLDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGLDFRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVVFAPLEADRHPDHTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPGNHPFAPSFLVKISAFIDQWEAAVLAYRSQFTGEAASETVGPKGVEARKAMRRYWGNYLGVDYAEPFVSPLPVLYVPWSRA 227
               SCOP domains d1uana_ A: Hypothetical protein TT1542                                                                                                                                                                                              SCOP domains
               CATH domains 1uanA00 A:1-227 LmbE-like                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhhhhhhhhhhh...eeeeeee........hhhhhhhhhhhhhhhhh..eeeeeee.......hhhhhhhhhhhhhhhheeeeeee.....hhhhhhhhhhhhhhhhhhh..............eeeee.........eeee...hhhhhhhhhhhhhhhhh-------.hhhhhhhhhhhhhhhhhhh....eeee.....ee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uan A   1 MLDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGLDFRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVVFAPLEADRHPDHTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPGNHPFAPSFLVKISAFIDQWEAAVLAYRSQFT-------VGPKGVEARKAMRRYWGNYLGVDYAEPFVSPLPVLYVPWSRA 227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       | -     | 190       200       210       220       
                                                                                                                                                                                                           178     186                                         


Chain B from PDB  Type:PROTEIN  Length:219
 aligned with Q84BR2_THETH | Q84BR2 from UniProtKB/TrEMBL  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
         Q84BR2_THETH     1 MLDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGLDFRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVVFAPLEADRHPDHTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPGNHPFAPSFLVKISAFIDQWEAAVLAYRSQFTGEAASETVGPKGVEARKAMRRYWGNYLGVDYAEPFVSPLPVLYVPWSRA 227
               SCOP domains d1uanb_ B: Hypothetical protein TT1542                                                                                                                                                                                              SCOP domains
               CATH domains 1uanB00 B:1-227 LmbE-like                                                                                                                                                                                                           CATH domains
           Pfam domains (1) ----PIG-L-1uanB01 B:5-122                                                                                                 --------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----PIG-L-1uanB02 B:5-122                                                                                                 --------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .eeeeeee...hhhhhhhhhhhhhhhhh...eeeeeee........hhhhhhhhhhhhhhhhh..eeeeeee.......hhhhhhhhhhhhhhhheeeeeee.....hhhhhhhhhhhhhhhhhhh..............eeeee.........eeee...hhhhhhhhhhh.....--------.hhhhhhhhhhhhhhhhhhh....eeee.....ee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uan B   1 MLDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGLDFRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVVFAPLEADRHPDHTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPGNHPFAPSFLVKISAFIDQWEAAVLAYRSQF--------VGPKGVEARKAMRRYWGNYLGVDYAEPFVSPLPVLYVPWSRA 227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170      |  -     | 190       200       210       220       
                                                                                                                                                                                                          177      186
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: PIG-L] (5)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q84BR2_THETH | Q84BR2)
molecular function
    GO:0019213    deacetylase activity    Catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule.
biological process
    GO:0071793    bacillithiol biosynthetic process    The chemical reactions and pathways resulting in the formation of bacillithiol, the alpha-anomeric glycoside of L-cysteinyl-D-glucosamine with L-malic acid. Bacillithiol, produced widely in the Firmicutes and sporadically in other bacterial lineages, is a low-molecular-weight thiol analogous to mycothiol in the Actinomycetes and glutathione in many species.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1uan)
 
  Sites
(no "Sites" information available for 1uan)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1uan)
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1uan
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q84BR2_THETH | Q84BR2
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q84BR2_THETH | Q84BR2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1UAN)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1UAN)