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(-) Description

Title :  STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961
 
Authors :  T. A. Binkowski, R. Wu, S. F. Moy, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date :  09 Aug 04  (Deposition) - 21 Sep 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A  (3x)
Biol. Unit 3:  B  (3x)
Keywords :  Structural Genomics, Mcsg, Hypothetical Protein, Protein Structure Initiative, Psi, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. A. Binkowski, R. Wu, S. F. Moy, A. Joachimiak
Hypothetical Protein From Vibrio Cholerae O1 Biovar Eltor Str. N16961
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN VC0714
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPDM68
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    GeneVC0714
    Organism ScientificVIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961
    Organism Taxid243277
    StrainO1 BIOVAR ELTOR STR. N16961

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)AB
Biological Unit 2 (3x)A 
Biological Unit 3 (3x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2PO42Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 9)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
2PO43Ligand/IonPHOSPHATE ION
Biological Unit 3 (2, 9)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
2PO43Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:82 , SER A:86 , ARG B:62 , GLU B:63 , THR B:66BINDING SITE FOR RESIDUE PO4 B 201
2AC2SOFTWAREARG A:62 , GLU A:63 , THR A:66 , HOH A:236 , HOH A:245 , HOH A:280 , ASP B:85 , SER B:86BINDING SITE FOR RESIDUE PO4 A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1U9D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1U9D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1U9D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1U9D)

(-) Exons   (0, 0)

(no "Exon" information available for 1U9D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:122
 aligned with Q9KU16_VIBCH | Q9KU16 from UniProtKB/TrEMBL  Length:107

    Alignment length:122
                                           1                                                                                                          
                                     -     |   5        15        25        35        45        55        65        75        85        95       105  
         Q9KU16_VIBCH     - ---------------MPHLRFRAVEAHIVESLVPTLLNELSSLLSTARNAFTFELINTQYFAEGGVYPMVEVLWFGREQQTQDQIAQVITDQIRQLLGADSHLAVVFIPLQRTAYYLDGQHF 107
               SCOP domains d1u9da_ A: Hypothetical protein VC0714                                                                                     SCOP domains
               CATH domains 1u9dA00 A:-14-107 Macrophage Migration Inhibitory Factor                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeee..hhhhhhhhhhhhhhhhhhhhh.hhhhheeee.............eeeeee...hhhhhhhhhhhhhhhhhhhhh.....eeeeee.hhhh.ee..ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u9d A -14 GVDLGTENLYFSSNAmPHLRFRAVEAHIVESLVPTLLNELSSLLSTARNAFTFELINTQYFAEGGVYPmVEVLWFGREQQTQDQIAQVITDQIRQLLGADSHLAVVFIPLQRTAYYLDGQHF 107
                                    -5     |   5        15        25        35        45        55        65        75        85        95       105  
                                           1-MSE                                               54-MSE                                                 

Chain B from PDB  Type:PROTEIN  Length:122
 aligned with Q9KU16_VIBCH | Q9KU16 from UniProtKB/TrEMBL  Length:107

    Alignment length:122
                                           1                                                                                                          
                                     -     |   5        15        25        35        45        55        65        75        85        95       105  
         Q9KU16_VIBCH     - ---------------MPHLRFRAVEAHIVESLVPTLLNELSSLLSTARNAFTFELINTQYFAEGGVYPMVEVLWFGREQQTQDQIAQVITDQIRQLLGADSHLAVVFIPLQRTAYYLDGQHF 107
               SCOP domains d1u9db_ B: Hypothetical protein VC0714                                                                                     SCOP domains
               CATH domains 1u9dB00 B:-14-107 Macrophage Migration Inhibitory Factor                                                                   CATH domains
           Pfam domains (1) ---------------DUF1904-1u9dB01 B:1-106                                                                                   - Pfam domains (1)
           Pfam domains (2) ---------------DUF1904-1u9dB02 B:1-106                                                                                   - Pfam domains (2)
         Sec.struct. author .................eeeee..hhhhhhhhhhhhhhhhhhhhh.hhhhheeee.............eeeeee...hhhhhhhhhhhhhhhhhhhhh.....eeeeee.hhhh.ee..ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u9d B -14 GVDLGTENLYFSSNAmPHLRFRAVEAHIVESLVPTLLNELSSLLSTARNAFTFELINTQYFAEGGVYPmVEVLWFGREQQTQDQIAQVITDQIRQLLGADSHLAVVFIPLQRTAYYLDGQHF 107
                                    -5     |   5        15        25        35        45        55        65        75        85        95       105  
                                           1-MSE                                               54-MSE                                                 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: MIF (36)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9KU16_VIBCH | Q9KU16)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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